Browse Element(s) Details


OsAffx.11222.1.S1_at

Description tigr:9629.m02598
TID=OsAffx.11222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2720011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27160Os.33929.1.S1_at11/111+15472955..15479141Cullin-1, putative, expressed
LOC_Os01g27170Os.29851.1.S1_x_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170Os.29851.1.S2_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170Os.29851.2.S1_x_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170OsAffx.12970.1.S1_s_at1/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27180OsAffx.21138.1.S1_at11/111+15485296..15485751hypothetical protein
LOC_Os01g27190Os.4041.1.S1_at11/111+15487289..15488494C2 domain containing protein, expressed
LOC_Os01g27200OsAffx.11222.1.S1_at11/111+15494958..15497110expressed protein
LOC_Os01g27200OsAffx.14881.1.S1_at1/111+15494958..15497110expressed protein
LOC_Os01g27210Os.7911.1.S1_at11/111+15497241..15498725Glutathione S-transferase IV, putative, expressed
LOC_Os01g27219NANA1+15500532..15500677NA
LOC_Os01g27230Os.27098.2.A1_at11/111+15511948..1551516712-oxophytodienoate reductase 1, putative, expressed
LOC_Os01g27230Os.27098.2.A1_s_at11/111+15511948..1551516712-oxophytodienoate reductase 1, putative, expressed
LOC_Os01g27240Os.50513.1.S1_at11/111+15519726..15522561oxidoreductase, FAD/FMN-binding family protein, expressed
LOC_Os01g27240Os.27098.2.A1_s_at1/111+15519726..15522561oxidoreductase, FAD/FMN-binding family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11222.1.S1_at--753--4351Chr01:15496134..15496158 (25 bp)
CCAGACGTCGCTAGTGTGGACTCAA
LOC_Os01g27200
OsAffx.11222.1.S1_at--617--2431Chr01:15496191..15496215 (25 bp)
AAAACCAATCTCGTATGCCCTAGTG
LOC_Os01g27200
OsAffx.11222.1.S1_at--357--6891Chr01:15496203..15496227 (25 bp)
GTATGCCCTAGTGTTTGTCGAGATT
LOC_Os01g27200
OsAffx.11222.1.S1_at--1002--2311Chr01:15496293..15496317 (25 bp)
AAAGAGGGCGCCGACTACGACAACA
LOC_Os01g27200
OsAffx.11222.1.S1_at--1014--3051Chr01:15496343..15496367 (25 bp)
AATCTCGTTCTTTTTCTGCGAAACA
LOC_Os01g27200
OsAffx.11222.1.S1_at--212--2491Chr01:15496364..15496388 (25 bp)
AACAGGCTCTGACGGACTACAAGGT
LOC_Os01g27200
OsAffx.11222.1.S1_at--15--2231Chr01:15496382..15496854 (25 bp)
ACAAGGTGAGTCCTTTCGATCCGGT
LOC_Os01g27200
OsAffx.11222.1.S1_at--996--6351Chr01:15496847..15496871 (25 bp)
GATCCGGTTCTGTACCCTGAAGCAG
LOC_Os01g27200
OsAffx.11222.1.S1_at--18--251Chr01:15496900..15496924 (25 bp)
ATATCCAACCTCAACAGTGCCTTTA
LOC_Os01g27200
OsAffx.11222.1.S1_at--124--2571Chr01:15496999..15497023 (25 bp)
AACGTCGATGCTACCGAAATCCTTT
LOC_Os01g27200
OsAffx.11222.1.S1_at--197--10711Chr01:15497022..15497046 (25 bp)
TTGCGAGCACCCGAGTCGAGATTAG
LOC_Os01g27200
Target Sequence 
CCAGACGTCGCTAGTGTGGACTCAAGTTGGATCCATCGTCTTTCCGGTCTACGCTGCAAAACCAATCTCGTATGCCCTAG
TGTTTGTCGAGATTGAGAATGGTGCAGCAAAGAAAACGAGAAACGACATCACTTCAGCCGCACCTCCCGTCTCGACAGAA
AAGAGGGCGCCGACTACGACAACACTCAGGAAGAAGCCTCAAGCGGCCAAATCTCGTTCTTTTTCTGCGAAACAGGCTCT
GACGGACTACAAGGTGAGTCCTTTCGATCCGGTTCTGTACCCTGAAGCAGATCACTGGTTGGAAGAATACGATCTACAAT
ATCCAACCTCAACAGTGCCTTTACAGCAACAGCTGGACCAGCAACTCAGGGACCCTCTTGTCTTCCGGCACAAGGAGAAG
AGGTGCATGCCGATGGGAACGTCGATGCTACCGAAATCCTTTGCGAGCACCCGAGTCGAGATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis