Browse Element(s) Details


OsAffx.11220.1.S1_at

Description gb:NM_193815.1
DB_XREF= gi:34914713
GEN=P0560B06.22
TID=OsAffx.11220.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0560B06.22 (P0560B06.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2710011/11hypothetical protein
LOC_Os01g268968/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27050NANA1+15412423..15413785Flavin-binding monooxygenase-like family protein
LOC_Os01g27060Os.45908.1.S1_at7/111+15420877..15423270hypothetical protein
LOC_Os01g27060OsAffx.6700.1.S1_at1/111+15420877..15423270hypothetical protein
LOC_Os01g27070OsAffx.11219.1.S1_at11/111+15426766..15427323hypothetical protein
LOC_Os01g27080Os.47463.1.S1_x_at6/111+15427763..15432785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27080Os.14491.2.S1_x_at5/111+15427763..15432785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27090NANA1+15434210..15437514transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27100OsAffx.11220.1.S1_at11/111+15438398..15438937hypothetical protein
LOC_Os01g27110OsAffx.23412.2.S1_at11/111+15443287..15443784hypothetical protein
LOC_Os01g27110OsAffx.23412.1.S1_x_at4/111+15443287..15443784hypothetical protein
LOC_Os01g27120Os.35465.1.S1_at11/111+15445559..15446622expressed protein
LOC_Os01g27130OsAffx.23413.1.S1_x_at11/111+15447931..15450014hypothetical protein
LOC_Os01g27130OsAffx.23413.2.S1_at11/111+15447931..15450014hypothetical protein
LOC_Os01g27140Os.31088.1.S1_at2/111+15451678..15451989Glutaredoxin-like family protein
LOC_Os01g27150Os.15285.1.S1_a_at11/111+15457791..15466325Cullin-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11220.1.S1_at--703--9032Chr01:15438456..15438480 (25 bp)
TGCACGCCACGCTCAGGGTGTTCGT
LOC_Os01g27100
OsAffx.11220.1.S1_at--577--1071Chr01:15438551..15438575 (25 bp)
AGGGAGGCTCTGGTCAACATGCCGC
LOC_Os01g27100
OsAffx.11220.1.S1_at--1150--7232Chr01:15438590..15438614 (25 bp)
GTCGCCAGCTTCGTGTTCATGATCT
LOC_Os01g27100
OsAffx.11220.1.S1_at--122--4292Chr01:15438618..15438642 (25 bp)
CCTCCACCAGGAAGGGCGTTGGCTA
LOC_Os01g27100
OsAffx.11220.1.S1_at--52--6592Chr01:15438635..15438659 (25 bp)
GTTGGCTACCCCAGGGAGGCTCAAA
LOC_Os01g27100
OsAffx.11220.1.S1_at--179--3472Chr01:15438646..15438670 (25 bp)
CAGGGAGGCTCAAACTGGCACCGAG
LOC_Os01g27100
OsAffx.11220.1.S1_at--684--1412Chr01:15438768..15438792 (25 bp)
AGAACAACGACGACTGTCCCAAGAC
LOC_Os01g27100
OsAffx.11220.1.S1_at--982--7592Chr01:15438832..15438856 (25 bp)
GGGCAGCAGCGTGCAGAAGAACTCT
LOC_Os01g27100
OsAffx.11220.1.S1_at--1141--5351Chr01:15438847..15438871 (25 bp)
GAAGAACTCTGCCAACCAGGTTGTT
LOC_Os01g27100
OsAffx.11220.1.S1_at--219--9211Chr01:15438856..15438880 (25 bp)
TGCCAACCAGGTTGTTCCCATTCAA
LOC_Os01g27100
OsAffx.11220.1.S1_at--44--4312Chr01:15438873..15438897 (25 bp)
CCATTCAACCCTCCACTAAAGAGAT
LOC_Os01g27100
Target Sequence 
TGCACGCCACGCTCAGGGTGTTCGTCTTCCTCGCCCTCGCGTTCAGCGACGCCGGGATCCAGACCTGCCTCTTCCCCCAG
GAGAGCGCGACGTGGAGGGAGGCTCTGGTCAACATGCCGCTCGGCGTCGGCTTCGTCGCCAGCTTCGTGTTCATGATCTT
CCCCTCCACCAGGAAGGGCGTTGGCTACCCCAGGGAGGCTCAAACTGGCACCGAGGGCGGCGCCGACGCCGACAAAGATG
GCAAGGCCGAGCCTCCCAAGACCACCACCAACGGCGGCTCCGGCGGCGTCGACGCGGAAGGTAGCAAGCAGAAGAACAAC
GACGACTGTCCCAAGACCACCACCACCAATGACGGCAGCGGCGGCGGCGACGGCGCGGGCAGCAGCGTGCAGAAGAACTC
TGCCAACCAGGTTGTTCCCATTCAACCCTCCACTAAAGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis