Browse Element(s) Details


Os.45908.1.S1_at

Description gb:NM_193811.1
DB_XREF= gi:34914705
GEN=P0560B06.17
TID=Os.45908.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45908 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0560B06.17 (P0560B06.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0560B06.17 (P0560B06.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g270607/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27030OsAffx.31892.4.S1_at2/111+15397211..15397731hypothetical protein
LOC_Os01g27030Os.50256.1.S1_at1/111+15397211..15397731hypothetical protein
LOC_Os01g27040Os.32330.2.S1_x_at11/111+15402729..15410171Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os01g27040Os.32330.1.S1_at10/111+15402729..15410171Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os01g27050NANA1+15412423..15413785Flavin-binding monooxygenase-like family protein
LOC_Os01g27060Os.45908.1.S1_at7/111+15420877..15423270hypothetical protein
LOC_Os01g27060OsAffx.6700.1.S1_at1/111+15420877..15423270hypothetical protein
LOC_Os01g27070OsAffx.11219.1.S1_at11/111+15426766..15427323hypothetical protein
LOC_Os01g27080Os.47463.1.S1_x_at6/111+15427763..15432785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27080Os.14491.2.S1_x_at5/111+15427763..15432785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27090NANA1+15434210..15437514transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27100OsAffx.11220.1.S1_at11/111+15438398..15438937hypothetical protein
LOC_Os01g27110OsAffx.23412.2.S1_at11/111+15443287..15443784hypothetical protein
LOC_Os01g27110OsAffx.23412.1.S1_x_at4/111+15443287..15443784hypothetical protein
LOC_Os01g27120Os.35465.1.S1_at11/111+15445559..15446622expressed protein
LOC_Os01g27130OsAffx.23413.1.S1_x_at11/111+15447931..15450014hypothetical protein
LOC_Os01g27130OsAffx.23413.2.S1_at11/111+15447931..15450014hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45908.1.S1_at--1152--8572Chr01:15420466..15420490 (25 bp)
TGGGAGGCCTACACGGACGTCTACG
NONE
Os.45908.1.S1_at--880--5152Chr01:15420513..15420537 (25 bp)
GCAACGGGATGCTGTAGCAGCCAGT
NONE
Os.45908.1.S1_at--717--12Chr01:15420854..15420878 (25 bp)
AGGCGGTTGAGACACTCCTCGACAT
NONE
Os.45908.1.S1_at--195--2172Chr01:15420865..15420889 (25 bp)
ACACTCCTCGACATGGCAAAGCTTT
NONE
Os.45908.1.S1_at--38--5132Chr01:15420880..15420904 (25 bp)
GCAAAGCTTTTGACACAAGTGGCAT
LOC_Os01g27060
Os.45908.1.S1_at--559--2232Chr01:15420972..15420996 (25 bp)
ACAATATTTGGTGCGGCGAGCTCGT
LOC_Os01g27060
Os.45908.1.S1_at--51--7752Chr01:15421111..15421135 (25 bp)
GGTGTGGGCTCAAGTCAGCGCCTAT
LOC_Os01g27060
Os.45908.1.S1_at--1122--3372Chr01:15421126..15421150 (25 bp)
CAGCGCCTATTTTTGTCGGGAGAGA
LOC_Os01g27060
Os.45908.1.S1_at--608--8371Chr01:15421172..15421196 (25 bp)
GGCGATGACCAAATTTGCGTTGTTT
LOC_Os01g27060
Os.45908.1.S1_at--556--3052Chr01:15421869..15421893 (25 bp)
AATCAGGCATGACTTACTCCTACCT
LOC_Os01g27060
Os.45908.1.S1_at--526--9212Chr01:15421886..15421910 (25 bp)
TCCTACCTCGGAGTTAGGCCTCTAA
LOC_Os01g27060
Target Sequence 
TGGGAGGCCTACACGGACGTCTACGGGGGAGGCCCTGGCGGTTGGTGGCAACGGGATGCTGTAGCAGCCAGTGGCAAGGA
GGCGGTTGAGACACTCCTCGACATGGCAAAGCTTTTGACACAAGTGGCATGGGGCGGCGGTGAGCATTGGACAGAGGATG
GCAACAAGCGACGGAGCGAGGACGCAGCATGGGGAACACAATATTTGGTGCGGCGAGCTCGTGAAGGGTGTGGGCTCAAG
TCAGCGCCTATTTTTGTCGGGAGAGAGGGGGATGTGGGTGTGAATATGGCGATGACCAAATTTGCGTTGTTTGAGAGTGA
GGGAAGGAGCGGGGCTCGTGGATCAGGAAAATCAGGCATGACTTACTCCTACCTCGGAGTTAGGCCTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis