Browse Element(s) Details


Os.32330.2.S1_x_at

Description gb:NM_193807.1
DB_XREF= gi:34914697
GEN=P0560B06.13
TID=Os.32330.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32330 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative DNA-dependent ATPase (P0560B06.13), mRNA.
PROD=putative DNA-dependent ATPase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2704011/11Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os01g2687211/11Chromatin remodelling complex ATPase chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27010OsAffx.7233.1.S1_at1/111+15383155..15385618retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27020Os.4023.1.S1_at11/111+15386316..15394420transposon protein, putative, unclassified, expressed
LOC_Os01g27020OsAffx.23411.1.S1_at11/111+15386316..15394420transposon protein, putative, unclassified, expressed
LOC_Os01g27030OsAffx.31892.4.S1_at2/111+15397211..15397731hypothetical protein
LOC_Os01g27030Os.50256.1.S1_at1/111+15397211..15397731hypothetical protein
LOC_Os01g27040Os.32330.2.S1_x_at11/111+15402729..15410171Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os01g27040Os.32330.1.S1_at10/111+15402729..15410171Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os01g27050NANA1+15412423..15413785Flavin-binding monooxygenase-like family protein
LOC_Os01g27060Os.45908.1.S1_at7/111+15420877..15423270hypothetical protein
LOC_Os01g27060OsAffx.6700.1.S1_at1/111+15420877..15423270hypothetical protein
LOC_Os01g27070OsAffx.11219.1.S1_at11/111+15426766..15427323hypothetical protein
LOC_Os01g27080Os.47463.1.S1_x_at6/111+15427763..15432785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27080Os.14491.2.S1_x_at5/111+15427763..15432785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27090NANA1+15434210..15437514transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32330.2.S1_x_at--170--6772Chr01:15404283..15404307 (25 bp)
GTTAGACCGCTATAAGAATCCATGG
LOC_Os01g27040
Os.32330.2.S1_x_at--1117--8192Chr01:15404128..15404232 (25 bp)
GGAATGCGACCGTTTTATGCTTTGC
LOC_Os01g27040
Os.32330.2.S1_x_at--815--4992Chr01:15404051..15404075 (25 bp)
GCATGTCGCCTTTGTTCCGATTTGA
LOC_Os01g27040
Os.32330.2.S1_x_at--863--6852Chr01:15404023..15404047 (25 bp)
GTTTGTCAAGTCCAGAACCACCCAG
LOC_Os01g27040
Os.32330.2.S1_x_at--706--1712Chr01:15404007..15404031 (25 bp)
ACCACCCAGGAGTTGGCTAGGAGAT
LOC_Os01g27040
Os.32330.2.S1_x_at--473--972Chr01:15403989..15404013 (25 bp)
AGGAGATGTGATACCCTTATCCGTC
LOC_Os01g27040
Os.32330.2.S1_x_at--579--292Chr01:15403979..15404003 (25 bp)
ATACCCTTATCCGTCTAGTTGAGAA
LOC_Os01g27040
Os.32330.2.S1_x_at--129--5632Chr01:15403288..15403312 (25 bp)
GACACCGACAAAGCGATCTGCGTTA
LOC_Os01g27040
Os.32330.2.S1_x_at--305--5292Chr01:15403254..15403278 (25 bp)
GAAGGTGAAACTACTCCATCGAATT
LOC_Os01g27040
Os.32330.2.S1_x_at--603--3152Chr01:15403233..15403257 (25 bp)
AATTCTTTCAAGAGGCGACGCCAGT
LOC_Os01g27040
Os.32330.2.S1_x_at--493--5812Chr01:15403217..15403241 (25 bp)
GACGCCAGTCCCTTATGGATGACTA
LOC_Os01g27040
Target Sequence 
GTTAGACCGCTATAAGAATCCATGGTTAGAGTTGAAAATCCAGTATGGACAGAACAAAGGGAAGTTCTATAATGAGGAAT
GCGACCGTTTTATGCTTTGCATGGTGCATAAGCTTGGTTATGGAAACTGGGATGAACTGAAAGCTGCCTTCCGCATGTCG
CCTTTGTTCCGATTTGATTGGTTTGTCAAGTCCAGAACCACCCAGGAGTTGGCTAGGAGATGTGATACCCTTATCCGTCT
AGTTGAGAAAGAGAATCAGGAATATGATGAGCAAGAAAGGCAGGCAAGGAAGGACAAAAGGATGGCTAAGAACATGACAC
CGACAAAGCGATCTGCGTTAAGGGTTTCAGAAGGTGAAACTACTCCATCGAATTCTTTCAAGAGGCGACGCCAGTCCCTT
ATGGATGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32330.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis