Browse Element(s) Details


Os.32330.1.S1_at

Description gb:AK105265.1
DB_XREF= gi:32990474
TID=Os.32330.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA-dependent ATPase (P0560B06.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D05, full insert sequence.
FL= gb:AK105265.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2704010/11Chromatin remodelling complex ATPase chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27010OsAffx.7233.1.S1_at1/111+15383155..15385618retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27020Os.4023.1.S1_at11/111+15386316..15394420transposon protein, putative, unclassified, expressed
LOC_Os01g27020OsAffx.23411.1.S1_at11/111+15386316..15394420transposon protein, putative, unclassified, expressed
LOC_Os01g27030OsAffx.31892.4.S1_at2/111+15397211..15397731hypothetical protein
LOC_Os01g27030Os.50256.1.S1_at1/111+15397211..15397731hypothetical protein
LOC_Os01g27040Os.32330.2.S1_x_at11/111+15402729..15410171Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os01g27040Os.32330.1.S1_at10/111+15402729..15410171Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os01g27050NANA1+15412423..15413785Flavin-binding monooxygenase-like family protein
LOC_Os01g27060Os.45908.1.S1_at7/111+15420877..15423270hypothetical protein
LOC_Os01g27060OsAffx.6700.1.S1_at1/111+15420877..15423270hypothetical protein
LOC_Os01g27070OsAffx.11219.1.S1_at11/111+15426766..15427323hypothetical protein
LOC_Os01g27080Os.47463.1.S1_x_at6/111+15427763..15432785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27080Os.14491.2.S1_x_at5/111+15427763..15432785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27090NANA1+15434210..15437514transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32330.1.S1_at--376--4772Chr01:15403021..15403045 (25 bp)
GCTCCCTTTCAAGCTTGTCGGAAGT
LOC_Os01g27040
Os.32330.1.S1_at--54--2992Chr01:15402981..15403005 (25 bp)
AATGTGCGCGCTATGTGATGTTTAA
LOC_Os01g27040
Os.32330.1.S1_at--997--10092Chr01:15402950..15402974 (25 bp)
TAGGCGCACTTAACTCATCGCTGAG
LOC_Os01g27040
Os.32330.1.S1_at--603--9752Chr01:15402894..15402918 (25 bp)
TAATACTATATGTTTTCTCTGCGGG
LOC_Os01g27040
Os.32330.1.S1_at--203--7672Chr01:15402871..15402895 (25 bp)
GGGATTTCATGACCGCTCTGGCTAG
LOC_Os01g27040
Os.32330.1.S1_at--391--4812Chr01:15402857..15402881 (25 bp)
GCTCTGGCTAGCCTATGCATTAGGA
LOC_Os01g27040
Os.32330.1.S1_at--345--6152Chr01:15402799..15402823 (25 bp)
GAGGTGAACTCATCGAAGCTACCCT
LOC_Os01g27040
Os.32330.1.S1_at--876--5372Chr01:15402785..15402809 (25 bp)
GAAGCTACCCTTTTAAATCCCTATG
LOC_Os01g27040
Os.32330.1.S1_at--629--6772Chr01:15402755..15402779 (25 bp)
GTTACATTGGCCAAAAGTCCGCTCC
LOC_Os01g27040
Os.32330.1.S1_at--1028--2432Chr01:15402743..15402767 (25 bp)
AAAAGTCCGCTCCTAATCCGAGTAT
LOC_Os01g27040
Os.32330.1.S1_at--853--2992Chr01:15402729..15402753 (25 bp)
AATCCGAGTATTCTATCTTCCGAGT
NONE
Target Sequence 
GCTCCCTTTCAAGCTTGTCGGAAGTCTGGGAGAGCTTTGAAATGTGCGCGCTATGTGATGTTTAAAGCCTCTAGGCGCAC
TTAACTCATCGCTGAGGCCTAACTCAGTATGATAGTGTAGTGGTATATAATACTATATGTTTTCTCTGCGGGGATTTCAT
GACCGCTCTGGCTAGCCTATGCATTAGGAATCAGATGTACTATGGATTATCCAACTTTGGTAGAGGTGAACTCATCGAAG
CTACCCTTTTAAATCCCTATGCTTATGTTACATTGGCCAAAAGTCCGCTCCTAATCCGAGTATTCTATCTTCCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis