Browse Element(s) Details


Os.50256.1.S1_at

Description gb:AK120357.1
DB_XREF= gi:37989980
TID=Os.50256.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013067C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067C21, full insert sequence.
FL= gb:AK120357.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g268681/11hypothetical protein
LOC_Os01g270301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26856OsAffx.17848.1.S1_x_at8/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.1.S1_at7/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.5.S1_x_at5/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.4.S1_x_at5/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.2.S1_x_at3/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.3.S1_x_at2/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856Os.54363.1.S1_at2/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.11160.1.S1_s_at1/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26860OsAffx.7233.1.S1_at1/111+15228240..15230505retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g26864Os.4023.1.S1_at10/111+15231236..15239266transposon protein, putative, unclassified, expressed
LOC_Os01g26864OsAffx.23411.1.S1_at9/111+15231236..15239266transposon protein, putative, unclassified, expressed
LOC_Os01g26868OsAffx.31892.4.S1_at9/111+15241898..15243687hypothetical protein
LOC_Os01g26868Os.50256.1.S1_at1/111+15241898..15243687hypothetical protein
LOC_Os01g26872Os.32330.2.S1_x_at11/111+15247922..15255032Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os01g26876NANA1+15257296..15258696flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g26880NANA1+15264085..15264364hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50256.1.S1_at--1093--3931Chr12:15130761..15130785 (25 bp)
CGGCACATAGATGGCGGCGCACAGC
NONE
Os.50256.1.S1_at--293--7551Chr12:15130716..15130740 (25 bp)
GTGGCGCACGCAGGCAAGCCTGATC
NONE
Os.50256.1.S1_at--241--8231Chr12:15130704..15130728 (25 bp)
GGCAAGCCTGATCTTATGCCAGATC
NONE
Os.50256.1.S1_at--165--10153Chr01:15397373..15397398 (24 bp)
TATGCCAGATCTGATATTGGTGTTG
LOC_Os01g27030
Os.50256.1.S1_at--893--7371Chr12:15130659..15130683 (25 bp)
GTGAGCTGAGATTAAGTGTTGAACT
NONE
Os.50256.1.S1_at--63--8991Chr12:15130640..15130664 (25 bp)
TGAACTGAGATATTGCTGGCTTTGT
NONE
Os.50256.1.S1_at--133--10271Chr12:15130620..15130644 (25 bp)
TTTGTTGTGCAACTGATGGCTGCCC
NONE
Os.50256.1.S1_at--282--6231Chr12:15130606..15130630 (25 bp)
GATGGCTGCCCTGATTAATTGATAT
NONE
Os.50256.1.S1_at--155--8311Chr12:15130577..15130601 (25 bp)
GGCTTTGTTGTGCAAGTCTTGATGT
NONE
Os.50256.1.S1_at--29--5191Chr12:15130566..15130590 (25 bp)
GCAAGTCTTGATGTTGATGTCATGA
NONE
Os.50256.1.S1_at--416--791Chr12:15130511..15130535 (25 bp)
ATGTGTGTAGATGTGGTTTTGTTGT
NONE
Target Sequence 
CGGCACATAGATGGCGGCGCACAGCCGCACGGGAGGGAGCAGGCGGTGGCGCACGCAGGCAAGCCTGATCTTATGCCAGA
TCTGATATTGGTGTTGTGACTTGTGAGCTGAGATTAAGTGTTGAACTGAGATATTGCTGGCTTTGTTGTGCAACTGATGG
CTGCCCTGATTAATTGATATTGCTGGCTTTGTTGTGCAAGTCTTGATGTTGATGTCATGATGTAGATGTTGTAAGTGTTG
AACTTAAATTATGTGTGTAGATGTGGTTTTGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis