Browse Element(s) Details


OsAffx.31892.4.S1_at

Description gb:NM_193806.1
DB_XREF= gi:34914695
GEN=P0560B06.12
TID=OsAffx.31892.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0560B06.12 (P0560B06.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g268689/11hypothetical protein
LOC_Os01g270302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26856OsAffx.17848.1.S1_x_at8/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.1.S1_at7/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.5.S1_x_at5/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.4.S1_x_at5/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.2.S1_x_at3/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.3.S1_x_at2/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856Os.54363.1.S1_at2/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.11160.1.S1_s_at1/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26860OsAffx.7233.1.S1_at1/111+15228240..15230505retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g26864Os.4023.1.S1_at10/111+15231236..15239266transposon protein, putative, unclassified, expressed
LOC_Os01g26864OsAffx.23411.1.S1_at9/111+15231236..15239266transposon protein, putative, unclassified, expressed
LOC_Os01g26868OsAffx.31892.4.S1_at9/111+15241898..15243687hypothetical protein
LOC_Os01g26868Os.50256.1.S1_at1/111+15241898..15243687hypothetical protein
LOC_Os01g26872Os.32330.2.S1_x_at11/111+15247922..15255032Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os01g26876NANA1+15257296..15258696flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g26880NANA1+15264085..15264364hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31892.4.S1_at--332--2172Chr01:15397534..15397558 (25 bp)
ACAACACCCAACACTAACTCTAAAG
LOC_Os01g27030
OsAffx.31892.4.S1_at--314--6632Chr01:15397679..15397703 (25 bp)
GTTGGTGTCAAAAATTGCTCTCTGG
LOC_Os01g27030
OsAffx.31892.4.S1_at--1055--2431NONE
AAAATTGCTCTCTGGTAATAGTGGA
NONE
OsAffx.31892.4.S1_at--895--772Chr01:15398608..15398632 (25 bp)
ATGTCCTCATCATTCAGTTATGCTG
NONE
OsAffx.31892.4.S1_at--470--9652Chr01:15398621..15398645 (25 bp)
TCAGTTATGCTGGAAACACATGTCT
NONE
OsAffx.31892.4.S1_at--57--7152Chr01:15398642..15398666 (25 bp)
GTCTTTGATCAAAATCTTGCGAGGA
NONE
OsAffx.31892.4.S1_at--790--8892Chr01:15398695..15398719 (25 bp)
TGAGTACCCACTTTCCATTGTTGAT
NONE
OsAffx.31892.4.S1_at--1123--9612Chr01:15398719..15398743 (25 bp)
TCATGCTGGATTTCACAAGTTCTGT
NONE
OsAffx.31892.4.S1_at--337--3892Chr01:15398740..15398764 (25 bp)
CTGTGATGTATTGCAACCGTTGTTC
NONE
OsAffx.31892.4.S1_at--326--1612Chr01:15398755..15398779 (25 bp)
ACCGTTGTTCAAGTTAATGTCAAGG
NONE
OsAffx.31892.4.S1_at--377--7931NONE
GGATATTTTGGAGGTACTTACTTGG
NONE
Target Sequence 
ACAACACCCAACACTAACTCTAAAGATACTAATGTGATAGAGATAGATGATGATGTTGCAGTAGGGAACAAAAGAAAACT
AAAATATGCTATTTGGCAAGAATTTGGACAAGTAAAGGTCGGAAATGTGTGGAAAGCTAAATGTAGTTGGTGTCAAAAAT
TGCTCTCTGGTAATAGTGGAGGATGTCCTCATCATTCAGTTATGCTGGAAACACATGTCTTTGATCAAAATCTTGCGAGG
AAAAAACTTGCACTGATGATATGTCTTCATGAGTACCCACTTTCCATTGTTGATCATGCTGGATTTCACAAGTTCTGTGA
TGTATTGCAACCGTTGTTCAAGTTAATGTCAAGGAATACTATTAGGAAGGATATTTTGGAGGTACTTACTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31892.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis