Browse Element(s) Details


OsAffx.11160.1.S1_s_at

Description gb:NM_183856.1
DB_XREF= gi:34894839
GEN=P0554D10.23
TID=OsAffx.11160.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0554D10.23 (P0554D10.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2265011/11hypothetical protein
LOC_Os01g269801/11Transposable element protein, putative, MuDR
LOC_Os01g268561/11Transposable element protein, putative, MuDR
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22620Os.40855.5.S1_x_at4/111+12705632..12706909hypothetical protein
LOC_Os01g22630Os.1521.1.S2_at11/111+12707622..12714007YT521-B-like family protein, expressed
LOC_Os01g22630Os.1521.1.S1_at11/111+12707622..12714007YT521-B-like family protein, expressed
LOC_Os01g22640Os.38245.2.S1_x_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22640Os.38245.1.S1_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22640Os.38245.2.S1_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22650OsAffx.11160.1.S1_s_at11/111+12722094..12722522hypothetical protein
LOC_Os01g22660Os.1526.2.S1_x_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.1526.2.S1_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.1526.1.S1_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.24642.1.S1_at1/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22670NANA1+12728238..12729340Papain family cysteine protease containing protein
LOC_Os01g22680Os.8360.1.S1_at2/111+12734448..12735643Papain family cysteine protease containing protein
LOC_Os01g22700OsAffx.23343.1.S1_at11/111+12739416..12740069transporter, putative
LOC_Os01g22710OsAffx.23343.1.S1_at2/111+12740999..12742624major facilitator superfamily protein, expressed
LOC_Os01g22710Os.46485.1.S1_at1/111+12740999..12742624major facilitator superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11160.1.S1_s_at--218--1913Chr01:15352777..15352798 (22 bp)
ACGGTGCTCGGGACCGCTAGATCCG
LOC_Os01g26980
OsAffx.11160.1.S1_s_at--1088--4851Chr01:12722450..12722474 (25 bp)
GCTAGATCCGCCTTCACAATAGTGA
LOC_Os01g22650
OsAffx.11160.1.S1_s_at--889--1851Chr01:12722375..12722399 (25 bp)
ACGACAGCGGCTGCTACCATGACGA
LOC_Os01g22650
OsAffx.11160.1.S1_s_at--65--691Chr01:12722357..12722381 (25 bp)
ATGACGACCACCGAGCCTCAAGAAG
LOC_Os01g22650
OsAffx.11160.1.S1_s_at--914--4291Chr01:12722342..12722366 (25 bp)
CCTCAAGAAGGTTCTAGTGGCTCCA
LOC_Os01g22650
OsAffx.11160.1.S1_s_at--980--10571Chr01:12722304..12722328 (25 bp)
TTCTAGATCCGGCAGGCAGTGGCTC
LOC_Os01g22650
OsAffx.11160.1.S1_s_at--198--9451Chr01:12722281..12722305 (25 bp)
TCGGAGCTCGGGTGGTGGATCCAGA
LOC_Os01g22650
OsAffx.11160.1.S1_s_at--383--4371Chr01:12722236..12722260 (25 bp)
CCACAGGTGGTGGAGCTCGGTCACA
LOC_Os01g22650
OsAffx.11160.1.S1_s_at--1138--8351Chr01:12722201..12722225 (25 bp)
GGCGGATTCGGTGATGGCTCAGGCA
LOC_Os01g22650
OsAffx.11160.1.S1_s_at--926--8871Chr01:12722190..12722214 (25 bp)
TGATGGCTCAGGCACGGCGGCGCAT
LOC_Os01g22650
OsAffx.11160.1.S1_s_at--791--8391Chr01:12722172..12722196 (25 bp)
GGCGCATCCGAAGGCGGAGCTCAAG
LOC_Os01g22650
Target Sequence 
ACGGTGCTCGGGACCGCTAGATCCGCCTTCACAATAGTGAAGAAAAGGGTGGTCGAGGTAAAAGAGGTGGATCCGGCGGC
CGCTGCCACGACGACAGCGGCTGCTACCATGACGACCACCGAGCCTCAAGAAGGTTCTAGTGGCTCCAACCCCCTCCCCT
CTTCTAGATCCGGCAGGCAGTGGCTCGGAGCTCGGGTGGTGGATCCAGAGGCTCGGGATGGTGGGGTCGCCACAGGTGGT
GGAGCTCGGTCACAGGAGGCGGGTGGCGGATTCGGTGATGGCTCAGGCACGGCGGCGCATCCGAAGGCGGAGCTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11160.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis