Browse Element(s) Details


OsAffx.23343.1.S1_at

Description gb:NM_183862.1
DB_XREF= gi:34894851
GEN=P0554D10.29
TID=OsAffx.23343.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0554D10.29 (P0554D10.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2270011/11transporter, putative
LOC_Os01g227102/11major facilitator superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22640Os.38245.2.S1_x_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22640Os.38245.1.S1_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22640Os.38245.2.S1_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22650OsAffx.11160.1.S1_s_at11/111+12722094..12722522hypothetical protein
LOC_Os01g22660Os.1526.2.S1_x_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.1526.2.S1_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.1526.1.S1_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.24642.1.S1_at1/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22670NANA1+12728238..12729340Papain family cysteine protease containing protein
LOC_Os01g22680Os.8360.1.S1_at2/111+12734448..12735643Papain family cysteine protease containing protein
LOC_Os01g22700OsAffx.23343.1.S1_at11/111+12739416..12740069transporter, putative
LOC_Os01g22710OsAffx.23343.1.S1_at2/111+12740999..12742624major facilitator superfamily protein, expressed
LOC_Os01g22710Os.46485.1.S1_at1/111+12740999..12742624major facilitator superfamily protein, expressed
LOC_Os01g22720OsAffx.11162.1.S1_at9/111+12747833..12752164hypothetical protein
LOC_Os01g22720Os.52284.2.S1_x_at1/111+12747833..12752164hypothetical protein
LOC_Os01g22730NANA1+12759785..12761450mutator transposable element, putative
LOC_Os01g22740NANA1+12764175..12767402transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23343.1.S1_at--932--4392Chr01:12739528..12739552 (25 bp)
GCCAACTTCTCAAGGCCATGCTGCT
LOC_Os01g22700
OsAffx.23343.1.S1_at--761--2952Chr01:12741110..12741134 (25 bp)
AAGGCCATGCTGCTGGCCTTCGCTT
LOC_Os01g22710
OsAffx.23343.1.S1_at--137--7171Chr01:12739823..12739847 (25 bp)
GTCGTCGTTCTTCACAGGAAACCTC
LOC_Os01g22700
OsAffx.23343.1.S1_at--583--10511Chr01:12739833..12739857 (25 bp)
TTCACAGGAAACCTCGTCGTCGTTC
LOC_Os01g22700
OsAffx.23343.1.S1_at--152--7211Chr01:12739851..12739875 (25 bp)
GTCGTTCTTCCATACAGTCTCATAT
LOC_Os01g22700
OsAffx.23343.1.S1_at--918--331Chr01:12739862..12739886 (25 bp)
ATACAGTCTCATATGTGCACCAATG
LOC_Os01g22700
OsAffx.23343.1.S1_at--662--9032Chr01:12739877..12739901 (25 bp)
TGCACCAATGTGTGACCGCGGGTGT
LOC_Os01g22700
OsAffx.23343.1.S1_at--703--4491Chr01:12739928..12739952 (25 bp)
GCCGGTCAGTGCTGAGGAGCACCAA
LOC_Os01g22700
OsAffx.23343.1.S1_at--639--3372Chr01:12739947..12739971 (25 bp)
CACCAATGTGCTCTAGTGCTTGTGC
LOC_Os01g22700
OsAffx.23343.1.S1_at--48--10831Chr01:12739966..12739990 (25 bp)
TTGTGCACACTCAGCACTCAGGATG
LOC_Os01g22700
OsAffx.23343.1.S1_at--726--3752Chr06:1152369..1152388 (20 bp)
CTCAGCACTCAGGATGGTGTAAGCC
NONE
Target Sequence 
GCCAACTTCTCAAGGCCATGCTGCTGGCCTTCGCTTGGGCTTTCGACGCGCAGCAGGTGTTCATGTCCGTGTTCACGGAC
GCGGAGCCGCCATGGCACTGCACCGGCGTCGTCGATGCGGTTGAGGCGGCGGCGGGCGACTCCGGCTCGTCCTGCTCTTC
GCCGGCCACTTCGGCTTCGCCGTGCGCGCTCCCGCTCGGCACGTGGGAGTGGGACCGCCTGGCCAAGACGTCGGTGGTGT
CGGACTGGGCGCTCAACTGCAGCGGCGGCGGCCCAGCGCTCGTCTCCCTCCCGGCGTCGTCGTTCTTCACAGGAAACCTC
GTCGTCGTTCTTCCATACAGTCTCATATGTGCACCAATGTGTGACCGCGGGTGTGAGTCCCGTATGTGCTCGTGTGTGGG
GCCGGTCAGTGCTGAGGAGCACCAATGTGCTCTAGTGCTTGTGCACACTCAGCACTCAGGATGGTGTAAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis