Browse Element(s) Details


OsAffx.11162.1.S1_at

Description gb:NM_183865.1
DB_XREF= gi:34894857
GEN=P0554D10.32
TID=OsAffx.11162.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0554D10.32 (P0554D10.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g227209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22660Os.1526.2.S1_x_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.1526.2.S1_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.1526.1.S1_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.24642.1.S1_at1/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22670NANA1+12728238..12729340Papain family cysteine protease containing protein
LOC_Os01g22680Os.8360.1.S1_at2/111+12734448..12735643Papain family cysteine protease containing protein
LOC_Os01g22700OsAffx.23343.1.S1_at11/111+12739416..12740069transporter, putative
LOC_Os01g22710OsAffx.23343.1.S1_at2/111+12740999..12742624major facilitator superfamily protein, expressed
LOC_Os01g22710Os.46485.1.S1_at1/111+12740999..12742624major facilitator superfamily protein, expressed
LOC_Os01g22720OsAffx.11162.1.S1_at9/111+12747833..12752164hypothetical protein
LOC_Os01g22720Os.52284.2.S1_x_at1/111+12747833..12752164hypothetical protein
LOC_Os01g22730NANA1+12759785..12761450mutator transposable element, putative
LOC_Os01g22740NANA1+12764175..12767402transposon protein, putative, unclassified
LOC_Os01g22750NANA1+12768021..12774176retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11162.1.S1_at--690--9231Chr01:12751410..12751434 (25 bp)
TCCATATGTTCCCACGTGTAAGCGA
LOC_Os01g22720
OsAffx.11162.1.S1_at--93--6211Chr01:12751485..12751509 (25 bp)
GAGGCAGTTTGCATCGACCGCGTTG
LOC_Os01g22720
OsAffx.11162.1.S1_at--98--4051Chr01:12751505..12751529 (25 bp)
CGTTGGCAAGGTCCCACATGGGCTA
LOC_Os01g22720
OsAffx.11162.1.S1_at--838--7531Chr01:12751524..12751548 (25 bp)
GGGCTAAGGCACATCAACGTTCGTC
LOC_Os01g22720
OsAffx.11162.1.S1_at--266--6271Chr01:12751661..12751685 (25 bp)
GATGTCTCCATTGTGGAACCTGGCA
LOC_Os01g22720
OsAffx.11162.1.S1_at--35--5451Chr01:12751676..12751700 (25 bp)
GAACCTGGCAGAGCAAGCTTCATCT
LOC_Os01g22720
OsAffx.11162.1.S1_at--348--10711Chr01:12752006..12752030 (25 bp)
TTGCTGAATGTCATGGCCAACCTCT
LOC_Os01g22720
OsAffx.11162.1.S1_at--114--10631Chr01:12752030..12752054 (25 bp)
TTCGACCCCTTGACCATGAGATCAA
LOC_Os01g22720
OsAffx.11162.1.S1_at--937--5931Chr01:12752084..12752108 (25 bp)
GAGCAGAATTCTGGCTTTGCCTTGG
LOC_Os01g22720
OsAffx.11162.1.S1_at--1082--9691Chr01:12752824..12752848 (25 bp)
TCAAGGCAACGAGTGGCTGCGTACT
NONE
OsAffx.11162.1.S1_at--1007--4771Chr01:12752839..12752863 (25 bp)
GCTGCGTACTTGTCATCTTGGAGTC
NONE
Target Sequence 
TCCATATGTTCCCACGTGTAAGCGATGGCNNNCNGNNNNNNTCCNNCNTCNNNNNNGNNNNNNNAGCCACTAGGAGAGGC
AGTTTGCATCGACCGCGTTGGCAAGGTCCCACATGGGCTAAGGCACATCAACGTTCGTCGTCCCGTGCGTGCGGCAAAGC
TACAGAGGAAGAGAGGCAGCACACGGCTGCGCGTGTGGTGGCGGCCGAGCAGCGGCATGGGCCACGGCGCCAGGTGGAAG
ATGGCAAGCTTGATGTCTCCATTGTGGAACCTGGCAGAGCAAGCTTCATCTCAAGGCAATTGCTGAATGTCATGGCCAAC
CTCTTCGACCCCTTGACCATGAGATCAAGCTTGGCCACCGTGCGGCACGGCAGCAGGGAGCAGAATTCTGGCTTTGCCTT
GGCCTCCGNTNNTNNANNNNCNNNNGNCGACNNNNNNNGNGNANTGNNNNNNNNNNNNGTCAAGGCAACGAGTGGCTGCG
TACTTGTCATCTTGGAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis