Browse Element(s) Details


Os.8360.1.S1_at

Description gb:AU031835
DB_XREF= gi:3767808
DB_XREF=AU031835
CLONE=R2023_20Z
TID=Os.8360.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=3
UG=Os.8360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative bromelain-like thiol protaease (P0440D10.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2455011/11Papain family cysteine protease containing protein, expressed
LOC_Os01g246006/11Papain family cysteine protease containing protein, expressed
LOC_Os01g226802/11Papain family cysteine protease containing protein
LOC_Os01g118401/11Papain family cysteine protease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24500OsAffx.22836.1.S1_at11/111+13797382..13799545hypothetical protein
LOC_Os01g24510Os.47463.1.S1_x_at6/111+13805243..13806237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24510Os.14491.2.S1_x_at5/111+13805243..13806237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24520NANA1+13806422..13807773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24530NANA1+13810860..13813302transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24540NANA1+13814812..13817906transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24550Os.8360.1.S1_at11/111+13820399..13821820Papain family cysteine protease containing protein, expressed
LOC_Os01g24560Os.48328.1.S1_at1/111+13824783..13825988Papain family cysteine protease containing protein, expressed
LOC_Os01g24570NANA1+13830473..13831517Papain family cysteine protease containing protein
LOC_Os01g24590OsAffx.23631.3.A1_at11/111+13840082..13841102hypothetical protein
LOC_Os01g24600Os.8360.1.S1_at6/111+13841744..13843096Papain family cysteine protease containing protein, expressed
LOC_Os01g24610NANA1+13844134..13845201transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0007568biological_processaging
GO:0009723biological_processresponse to ethylene stimulus
GO:0010150biological_processleaf senescence
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8360.1.S1_at--674--4692Chr01:13842704..13842728 (25 bp)
GCGGCGTGTACAAGGGCCCCTGCAA
LOC_Os01g24600
Os.8360.1.S1_at--489--8732Chr01:13842724..13842748 (25 bp)
TGCAACCCCGGGAGTGTGAACCACG
LOC_Os01g24600
Os.8360.1.S1_at--237--7192Chr01:13842760..13842784 (25 bp)
GTCGGCTACTGCGAGAACTTCGGCG
LOC_Os01g24600
Os.8360.1.S1_at--710--7974Chr01:13842797..13842821 (25 bp)
GGATCGCCAAGAACTCGTGGAGCAA
LOC_Os01g24600
Os.8360.1.S1_at--489--1073Chr01:13842836..13842860 (25 bp)
AGGGCTACGTGTACCTGGCCAAGGA
LOC_Os01g24600
Os.8360.1.S1_at--795--7872Chr01:13842915..13842939 (25 bp)
GGTTTAATCCGCGTTCGTGTGCCCG
LOC_Os01g24600
Os.8360.1.S1_at--644--4531Chr01:13820544..13820568 (25 bp)
GCCCGGCTGGCTTTTCTTAAGTATA
LOC_Os01g24550
Os.8360.1.S1_at--133--7331Chr01:13820515..13820539 (25 bp)
GTGCTAGTGTCTATCTGTCCATGGA
LOC_Os01g24550
Os.8360.1.S1_at--405--6251Chr01:13820467..13820491 (25 bp)
GATGGATAGATGCATCCGTTGCTAG
LOC_Os01g24550
Os.8360.1.S1_at--550--551Chr01:13820454..13820478 (25 bp)
ATCCGTTGCTAGTTTTCTACCAGTT
LOC_Os01g24550
Os.8360.1.S1_at--955--3711Chr01:13820438..13820462 (25 bp)
CTACCAGTTGTGAGAATGCAATCAT
LOC_Os01g24550
Target Sequence 
GCGGCGTGTACAAGGGCCCCTGCAACCCCGGGAGTGTGAACCACGCCGTCACCATCGTCGGCTACTGCGAGAACTTCGGC
GGGGAAAAGTACTGGATCGCCAAGAACTCGTGGAGCAACGACTGGGGTGAGCAGGGCTACGTGTACCTGGCCAAGGACGT
GTGGTGGCCGCAGGGTACCTGTGGCCTCGCCACCTCCCCATTCTACCCCACGGTTTAATCCGCGTTCGTGTGCCCGGCTG
GCTTTTCTTAAGTATATACAGTGCTAGTGTCTATCTGTCCATGGATGAAGACACGGACGGCTGAGATTGATGGATAGATG
CATCCGTTGCTAGTTTTCTACCAGTTGTGAGAATGCAATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis