Browse Element(s) Details


OsAffx.23631.3.A1_at

Description tigr:9629.m02377
TID=OsAffx.23631.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2459011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24540NANA1+13814812..13817906transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24550Os.8360.1.S1_at11/111+13820399..13821820Papain family cysteine protease containing protein, expressed
LOC_Os01g24560Os.48328.1.S1_at1/111+13824783..13825988Papain family cysteine protease containing protein, expressed
LOC_Os01g24570NANA1+13830473..13831517Papain family cysteine protease containing protein
LOC_Os01g24590OsAffx.23631.3.A1_at11/111+13840082..13841102hypothetical protein
LOC_Os01g24600Os.8360.1.S1_at6/111+13841744..13843096Papain family cysteine protease containing protein, expressed
LOC_Os01g24610NANA1+13844134..13845201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24620NANA1+13847098..13850334transposon protein, putative, unclassified
LOC_Os01g24630NANA1+13850973..13857128transposon protein, putative, unclassified
LOC_Os01g24640Os.10827.1.S1_x_at6/111+13858327..13859784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24640Os.46055.2.S1_x_at4/111+13858327..13859784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24650NANA1+13860078..13860709hypothetical protein
LOC_Os01g24660OsAffx.25936.7.S1_s_at10/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.1.S1_s_at10/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.1.S1_at1/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.5.S1_x_at1/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.2.S1_x_at1/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23631.3.A1_at--99--2671Chr01:13841000..13841024 (25 bp)
AAGCCGAGGAGCGAGTTGCGGAGCA
LOC_Os01g24590
OsAffx.23631.3.A1_at--50--4631Chr01:13840990..13841014 (25 bp)
GCGAGTTGCGGAGCAGGTGGCAGAA
LOC_Os01g24590
OsAffx.23631.3.A1_at--876--7252Chr01:13822107..13822126 (20 bp)
GGGACGAAATATCACAAAAGGTACA
NONE
OsAffx.23631.3.A1_at--1017--7832Chr01:13822121..13822145 (25 bp)
GGTACAATGTCTTTGAAACTCTCAT
NONE
OsAffx.23631.3.A1_at--559--2012Chr01:13822138..13822162 (25 bp)
ACTCTCATTTCAATTTTCTCCTTTC
NONE
OsAffx.23631.3.A1_at--1040--3091Chr01:13840158..13840182 (25 bp)
CATTTCAATTTTCTCCTTTCCAAGG
LOC_Os01g24590
OsAffx.23631.3.A1_at--39--3091Chr01:13840152..13840176 (25 bp)
AATTTTCTCCTTTCCAAGGAAGCAT
LOC_Os01g24590
OsAffx.23631.3.A1_at--360--10571Chr01:13840148..13840172 (25 bp)
TTCTCCTTTCCAAGGAAGCATCCTT
LOC_Os01g24590
OsAffx.23631.3.A1_at--507--8192Chr01:13822166..13822198 (25 bp)
GGAAGCATCCTTGTTGTGATTGGCA
NONE
OsAffx.23631.3.A1_at--837--2712Chr01:13822168..13822200 (25 bp)
AAGCATCCTTGTTGTGATTGGCAGA
NONE
OsAffx.23631.3.A1_at--301--6612Chr01:13822192..13822215 (24 bp)
GATTGGCAGATTGAACACTTCCTTT
NONE
Target Sequence 
AAGCCGAGGAGCGAGTTGCGGAGCAGGTGGCAGAAGCACCCCTCCCCGCCGCCGCCGCTGGGGGAGACACCGCGGAGGAA
GGCCGCGCAGCGGGCCTCCGTGGGCGCGGGCACGGGCCGCACGGGCGGCGCCACCACCGCGACGTGCGCCAGGCACGGCG
CCACCGACACGATGGCCACTGCGCACGGCGTCGCCGGCGGCACCTCTAAGAACGCCCCCGCCGCCGACGCTGCCGCCGTG
GCCACGACACCACCCCCGGCGCCGGGAAGACGGGGACGAAATATCACAAAAGGTACAATGTCTTTGAAACTCTCATTTCA
ATTTTCTCCTTTCCAAGGAAGCATCCTTGTTGTGATTGGCAGATTGAACACTTCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23631.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis