Browse Element(s) Details


Os.48328.1.S1_at

Description gb:NM_183998.1
DB_XREF= gi:34895123
GEN=P0440D10.8
TID=Os.48328.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48328 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative cysteine protease (P0440D10.8), mRNA.
PROD=putative cysteine protease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g245601/11Papain family cysteine protease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24510Os.47463.1.S1_x_at6/111+13805243..13806237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24510Os.14491.2.S1_x_at5/111+13805243..13806237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24520NANA1+13806422..13807773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24530NANA1+13810860..13813302transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24540NANA1+13814812..13817906transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24550Os.8360.1.S1_at11/111+13820399..13821820Papain family cysteine protease containing protein, expressed
LOC_Os01g24560Os.48328.1.S1_at1/111+13824783..13825988Papain family cysteine protease containing protein, expressed
LOC_Os01g24570NANA1+13830473..13831517Papain family cysteine protease containing protein
LOC_Os01g24590OsAffx.23631.3.A1_at11/111+13840082..13841102hypothetical protein
LOC_Os01g24600Os.8360.1.S1_at6/111+13841744..13843096Papain family cysteine protease containing protein, expressed
LOC_Os01g24610NANA1+13844134..13845201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24620NANA1+13847098..13850334transposon protein, putative, unclassified
LOC_Os01g24630NANA1+13850973..13857128transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0007568biological_processaging
GO:0009723biological_processresponse to ethylene stimulus
GO:0010150biological_processleaf senescence
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48328.1.S1_at--353--7191Chr01:13825799..13825823 (25 bp)
GTCGTCAAACCACGCGGTGACGCTG
LOC_Os01g24560
Os.48328.1.S1_at--1084--8431Chr01:13825991..13826015 (25 bp)
GGCCATATACATATATCGATCGCAG
NONE
Os.48328.1.S1_at--506--10191Chr01:13826002..13826026 (25 bp)
TATATCGATCGCAGCTAGCCGCATG
NONE
Os.48328.1.S1_at--175--7131Chr01:13826033..13826057 (25 bp)
GTCATCCTCAGCCAGTTCTTCTTCT
NONE
Os.48328.1.S1_at--820--3791Chr01:13826063..13826087 (25 bp)
CTCGCCGTTAGTTACAACAAGTTGG
NONE
Os.48328.1.S1_at--274--2991Chr01:13826102..13826126 (25 bp)
AATGATCGAGTAGCGTTTGCGAGGT
NONE
Os.48328.1.S1_at--980--4631Chr01:13826114..13826138 (25 bp)
GCGTTTGCGAGGTTAACTATTGAAA
NONE
Os.48328.1.S1_at--552--2991NONE
AATGAGTGAGTGGTCCTGTTTGTTC
NONE
Os.48328.1.S1_at--956--7791Chr01:13826148..13826172 (25 bp)
GGTCCTGTTTGTTCGATGTTTAATG
NONE
Os.48328.1.S1_at--223--731Chr01:13826163..13826187 (25 bp)
ATGTTTAATGCGCTGGATTTCCCTT
NONE
Os.48328.1.S1_at--70--611Chr01:13826170..13826194 (25 bp)
ATGCGCTGGATTTCCCTTGAAAAGT
NONE
Target Sequence 
GTCGTCAAACCACGCGGTGACGCTGGTGGGTTACTGCCAGGACGGCGCGTCGGGGAAGAAGTACTGGNTNGCCAAGAACT
CGTGGGGNAAGACGTGGGGGCAGCAGGGCTANATCCTGCTGGAGAAGGANNTCNTGCAGCCGCATGGCACNTGCGGNCTC
GCCGTCTCACCNTTCTACCCCACCGTCTAGCCGGCCATATACATATATCGATCGCAGCTAGCCGCATGCCGGCCGTCATC
CTCAGCCAGTTCTTCTTCTTTTTCCTCGCCGTTAGTTACAACAAGTTGGAATAATTAAGGAATAATGATCGAGTAGCGTT
TGCGAGGTTAACTATTGAAATGAGTGAGTGGTCCTGTTTGTTCGATGTTTAATGCGCTGGATTTCCCTTGAAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis