Browse Element(s) Details


OsAffx.22836.1.S1_at

Description tigr:9629.m02368
TID=OsAffx.22836.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2450011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24470Os.34936.2.S1_x_at11/111+13777335..13782372dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g24470Os.34936.1.S1_at11/111+13777335..13782372dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g24480Os.10306.2.S1_x_at11/111+13782436..13787245expressed protein
LOC_Os01g24490Os.52333.1.S1_at11/111+13790006..13792301expressed protein
LOC_Os01g24500OsAffx.22836.1.S1_at11/111+13797382..13799545hypothetical protein
LOC_Os01g24510Os.47463.1.S1_x_at6/111+13805243..13806237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24510Os.14491.2.S1_x_at5/111+13805243..13806237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24520NANA1+13806422..13807773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24530NANA1+13810860..13813302transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24540NANA1+13814812..13817906transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24550Os.8360.1.S1_at11/111+13820399..13821820Papain family cysteine protease containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22836.1.S1_at--279--9151Chr01:13799000..13799024 (25 bp)
TGCGTCCTGGGTGTAGTCTTCATGC
LOC_Os01g24500
OsAffx.22836.1.S1_at--1055--791Chr01:13799054..13799078 (25 bp)
ATGGGCCGCTTGGTGGATTCCTTGA
LOC_Os01g24500
OsAffx.22836.1.S1_at--296--8571Chr01:13799085..13799109 (25 bp)
TGGATACCTCTCTGGCAATAGCGTT
LOC_Os01g24500
OsAffx.22836.1.S1_at--161--6211Chr01:13799150..13799174 (25 bp)
GAGGCGGCGTGGTTAGTATCCATCC
LOC_Os01g24500
OsAffx.22836.1.S1_at--891--6631Chr01:13799200..13799224 (25 bp)
GTTGTTCATCCGTTTGTTCGACCAC
LOC_Os01g24500
OsAffx.22836.1.S1_at--1132--2651Chr01:13799249..13799273 (25 bp)
AAGCCGGTGTCTCTAGAGCTGACCA
LOC_Os01g24500
OsAffx.22836.1.S1_at--753--2931Chr01:13799273..13799297 (25 bp)
AAGGCCGCGTTCACAGGGTTCTTGG
LOC_Os01g24500
OsAffx.22836.1.S1_at--235--9851Chr01:13799342..13799366 (25 bp)
TACACCCACGCTTTCATAGTGCTTA
LOC_Os01g24500
OsAffx.22836.1.S1_at--181--291Chr01:13799357..13799381 (25 bp)
ATAGTGCTTACTGGGTCAGCTGTCC
LOC_Os01g24500
OsAffx.22836.1.S1_at--648--2291Chr01:13799449..13799473 (25 bp)
AAATGTAGCTTCTTCGTGTGCGCAC
LOC_Os01g24500
OsAffx.22836.1.S1_at--625--3931Chr01:13799484..13799508 (25 bp)
CGGCGGCTGTTGTTCCATTTGCAAG
LOC_Os01g24500
Target Sequence 
TGCGTCCTGGGTGTAGTCTTCATGCTTGTTGGAACGGCTCCACCGGTGTACGGCATGGGCCGCTTGGTGGATTCCTTGAG
GATCTTGGATACCTCTCTGGCAATAGCGTTCGGGGTGATCGTCGTGCTAATCACAATTGCACCTCTGAAGGAGGCGGCGT
GGTTAGTATCCATCCCGTGGATCCTTTCCTTTTTCGTGTGGTTGTTCATCCGTTTGTTCGACCACGACGAGGGAGAGGAC
AGGGATGTGAAGCCGGTGTCTCTAGAGCTGACCAAGGCCGCGTTCACAGGGTTCTTGGCCGTCTCCATACCGAGCTTCAG
CAATAGCTCCACCAGCGGCGGCTACACCCACGCTTTCATAGTGCTTACTGGGTCAGCTGTCCTCGCTGGCCTCGCGTGGA
GGCTGATCACGCACGTGAAGAAGCCGTCGCGAGCCATGGTCTGGGCTGAAAATGTAGCTTCTTCGTGTGCGCACATCTGT
GTTGCGGCGGCTGTTGTTCCATTTGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22836.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis