Browse Element(s) Details


Os.52333.1.S1_at

Description gb:AK066458.1
DB_XREF= gi:32976476
TID=Os.52333.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52333 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013064I01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013064I01, full insert sequence.
FL= gb:AK066458.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2449011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24450OsAffx.11188.1.S1_at11/111+13767344..13767661hypothetical protein
LOC_Os01g24460OsAffx.11189.1.S1_at11/111+13770948..13772366Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g24470Os.34936.2.S1_x_at11/111+13777335..13782372dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g24470Os.34936.1.S1_at11/111+13777335..13782372dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g24480Os.10306.2.S1_x_at11/111+13782436..13787245expressed protein
LOC_Os01g24490Os.52333.1.S1_at11/111+13790006..13792301expressed protein
LOC_Os01g24500OsAffx.22836.1.S1_at11/111+13797382..13799545hypothetical protein
LOC_Os01g24510Os.47463.1.S1_x_at6/111+13805243..13806237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24510Os.14491.2.S1_x_at5/111+13805243..13806237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24520NANA1+13806422..13807773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24530NANA1+13810860..13813302transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24540NANA1+13814812..13817906transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52333.1.S1_at--106--6131Chr01:13790562..13790586 (25 bp)
GAGTGTCGCGGTGATAATGTTCTAT
LOC_Os01g24490
Os.52333.1.S1_at--533--6511Chr01:13790532..13790556 (25 bp)
GATATATTGCGTGTGTTTCCTTCCA
LOC_Os01g24490
Os.52333.1.S1_at--34--8831Chr01:13790506..13790530 (25 bp)
TGATCGGCGTCGAGTACCGTCCAGG
LOC_Os01g24490
Os.52333.1.S1_at--257--9971Chr01:13790492..13790516 (25 bp)
TACCGTCCAGGCATGAGTGTCAACA
LOC_Os01g24490
Os.52333.1.S1_at--850--8731Chr01:13790475..13790499 (25 bp)
TGTCAACAGACGCAAGGCCTCCATA
LOC_Os01g24490
Os.52333.1.S1_at--143--8431Chr01:13790460..13790484 (25 bp)
GGCCTCCATATCCATACAACTGCGA
LOC_Os01g24490
Os.52333.1.S1_at--511--2211Chr01:13790445..13790469 (25 bp)
ACAACTGCGACCGATTATGCTGTTA
LOC_Os01g24490
Os.52333.1.S1_at--108--9131Chr01:13790428..13790452 (25 bp)
TGCTGTTAGTACTGCTGAGCATACT
LOC_Os01g24490
Os.52333.1.S1_at--78--2391Chr01:13790065..13790089 (25 bp)
AAACTCTTCTAGATACTACCTTGAA
LOC_Os01g24490
Os.52333.1.S1_at--1148--7911Chr01:13790027..13790051 (25 bp)
GGATTGTAAAATTTCTCCTTAGCAT
LOC_Os01g24490
Os.52333.1.S1_at--939--3811Chr01:13790013..13790037 (25 bp)
CTCCTTAGCATATGTGAGCTCTCAT
LOC_Os01g24490
Target Sequence 
GAGTGTCGCGGTGATAATGTTCTATGTACTGATATATTGCGTGTGTTTCCTTCCACTGATCGGCGTCGAGTACCGTCCAG
GCATGAGTGTCAACAGACGCAAGGCCTCCATATCCATACAACTGCGACCGATTATGCTGTTAGTACTGCTGAGCATACTG
ATATCTCACTTCACGGGCAGATGAAACTCTAAGAAAAAATGGTTCAAGAGCAAGTGCCAGATGACAAATAGTAAGCGTGC
ACAATATTGTCACCTGTTACAGCTTAAAGGTTGGCACGCTTACCGCCGAATTAACTGACTTTGTAAATTTTGTTTTTTCG
ATGGTTTAATTTGTACTGGTAGCAAGTATTATATTCCTGGTTAAAATGATATGAGAGGCATTATAGTCTCGGCTAATTGT
ACTTGATTTGGAGACCATTCGCCAGAATTACCAAATATTCTTGGCACAGGGTAATTTTATTGAGAAGACACCGGGGTGTA
TCACATTTTCTAATGTAAAACTCTTCTAGATACTACCTTGAAATACTTTCTTTAAGGATTGTAAAATTTCTCCTTAGCAT
ATGTGAGCTCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis