Browse Element(s) Details


Os.10306.2.S1_x_at

Description gb:CA763426
DB_XREF= gi:25807465
DB_XREF=BR060008A20F08.ab1
CLONE=BR060008A20F08.ab1
TID=Os.10306.2
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.10306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1146B04.19 (B1146B04.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2448011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24430Os.32188.1.S1_at11/111+13757667..13759135expressed protein
LOC_Os01g24440Os.34341.1.S1_at11/111+13761245..13762267expressed protein
LOC_Os01g24450OsAffx.11188.1.S1_at11/111+13767344..13767661hypothetical protein
LOC_Os01g24460OsAffx.11189.1.S1_at11/111+13770948..13772366Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g24470Os.34936.2.S1_x_at11/111+13777335..13782372dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g24470Os.34936.1.S1_at11/111+13777335..13782372dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g24480Os.10306.2.S1_x_at11/111+13782436..13787245expressed protein
LOC_Os01g24490Os.52333.1.S1_at11/111+13790006..13792301expressed protein
LOC_Os01g24500OsAffx.22836.1.S1_at11/111+13797382..13799545hypothetical protein
LOC_Os01g24510Os.47463.1.S1_x_at6/111+13805243..13806237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24510Os.14491.2.S1_x_at5/111+13805243..13806237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24520NANA1+13806422..13807773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24530NANA1+13810860..13813302transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10306.2.S1_x_at--302--6891Chr01:13782980..13783004 (25 bp)
GTATCTGGGCTTTTGGTACGACGAA
LOC_Os01g24480
Os.10306.2.S1_x_at--766--2392Chr12:15865667..15866086 (25 bp)
AAACTCACCTTCTCTTGATCCTCAT
NONE
Os.10306.2.S1_x_at--1122--8831Chr01:13782888..13782912 (25 bp)
TGATCCTCATTTGCAACCGTGGTAT
LOC_Os01g24480
Os.10306.2.S1_x_at--171--3011Chr01:13782860..13782884 (25 bp)
AATGCAGCGCATGTATTAAGCTCTG
LOC_Os01g24480
Os.10306.2.S1_x_at--764--9791Chr01:13782844..13782868 (25 bp)
TAAGCTCTGCAGAAACAGCGTCTAA
LOC_Os01g24480
Os.10306.2.S1_x_at--1048--6331Chr01:13782813..13782837 (25 bp)
GATGCTTATGAAGTATTCACCTGCT
LOC_Os01g24480
Os.10306.2.S1_x_at--813--6871Chr01:13782801..13782825 (25 bp)
GTATTCACCTGCTGATGGCAAGGAT
LOC_Os01g24480
Os.10306.2.S1_x_at--234--1251Chr01:13782775..13782799 (25 bp)
AGTTGTACAGGAAAGCTCTTATACC
LOC_Os01g24480
Os.10306.2.S1_x_at--10--6591Chr01:13782724..13782748 (25 bp)
GATTCCTATCATGGCTTGTACAGGA
LOC_Os01g24480
Os.10306.2.S1_x_at--982--8971Chr01:13782499..13782523 (25 bp)
TAATTCTGAAGGGTTCACCGGTTCA
LOC_Os01g24480
Os.10306.2.S1_x_at--921--7671Chr01:13782489..13782513 (25 bp)
GGGTTCACCGGTTCAGTGGTGCAAA
LOC_Os01g24480
Target Sequence 
GTATCTGGGCTTTTGGTACGACGAAGAATATGTGAANCGAAGGTTGGGCAGAGAGACTGGGGTTCAGTGANGCTCCCAAA
CTCACCTTCTCTTGATCCTCATTTGCAACCGTGGTATCGNAATGCAGCGCATGTATTAAGCTCTGCAGAAACAGCGTCTA
ACNGGGTGATGCTTATGAAGTATTCACCTGCTGATGGCAAGGATGAGTTGTACAGGAAAGCTCTTATACCTTNAAGCCCC
GATGGAGAATTGGAGANGATTCCTATCATGGCTTGTACAGGATTAGTTTTGAGTTGTNNNCANTTCACTAATGGTGTTGA
TCTTTGATNCAGATCTGATTATGGTTGTANAATATGGTNNATAACAACAGAAANTTAACATTCCNCCACAAAAGGGCTTG
CTTTTTGNTTGNTCTTTTNACCAAGGATGTGCAGNTTTTTTNGTACTTTTTGNTGAGTAAAAGNTTCNATTCCTTTGTGT
ACATTGTAATTCTGAAGGGTTCACCGGTTCAGTGGTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10306.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis