Browse Element(s) Details


Os.34341.1.S1_at

Description gb:AK071793.1
DB_XREF= gi:32981816
TID=Os.34341.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1146B04.16 (B1146B04.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114F06, full insert sequence.
FL= gb:AK071793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2444011/11expressed protein
LOC_Os02g152701/11Tyrosine-protein phosphatase YVH1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24400NANA1+13735984..13740958retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24410NANA1+13744337..13745641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24420OsAffx.23371.1.S1_x_at11/111+13747712..13754667expressed protein
LOC_Os01g24420OsAffx.29376.1.S1_x_at2/111+13747712..13754667expressed protein
LOC_Os01g24420OsAffx.22240.1.S1_x_at1/111+13747712..13754667expressed protein
LOC_Os01g24420OsAffx.266.1.S1_at1/111+13747712..13754667expressed protein
LOC_Os01g24420OsAffx.8338.1.S1_x_at1/111+13747712..13754667expressed protein
LOC_Os01g24430Os.32188.1.S1_at11/111+13757667..13759135expressed protein
LOC_Os01g24440Os.34341.1.S1_at11/111+13761245..13762267expressed protein
LOC_Os01g24450OsAffx.11188.1.S1_at11/111+13767344..13767661hypothetical protein
LOC_Os01g24460OsAffx.11189.1.S1_at11/111+13770948..13772366Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g24470Os.34936.2.S1_x_at11/111+13777335..13782372dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g24470Os.34936.1.S1_at11/111+13777335..13782372dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g24480Os.10306.2.S1_x_at11/111+13782436..13787245expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34341.1.S1_at--355--8851Chr01:13761580..13761604 (25 bp)
TGATCCCGTCTCTGGTGTCGGCGGA
LOC_Os01g24440
Os.34341.1.S1_at--809--3951Chr01:13761559..13761583 (25 bp)
CGGATTCGTCACTCTTGTCTGAAAT
LOC_Os01g24440
Os.34341.1.S1_at--1132--4212Chr02:8536469..8536636 (25 bp)
CCGCTGCCGCTTCTGTATATATGTA
LOC_Os02g15270
Os.34341.1.S1_at--521--271Chr01:13761516..13761540 (25 bp)
ATATGTACCTGCCTGTGATTCTATA
LOC_Os01g24440
Os.34341.1.S1_at--228--6611Chr01:13761482..13761506 (25 bp)
GATTGGGATCTCTGTTCCGTGGTAC
LOC_Os01g24440
Os.34341.1.S1_at--566--9351Chr01:13761457..13761481 (25 bp)
TCGCTTCTGGCGAATCGTGGAACAG
LOC_Os01g24440
Os.34341.1.S1_at--995--7511Chr01:13761441..13761465 (25 bp)
GTGGAACAGCCACAAATTCGTCGAA
LOC_Os01g24440
Os.34341.1.S1_at--522--5491Chr01:13761397..13761421 (25 bp)
GAACATGACCTTTTATCTTCGTTTG
LOC_Os01g24440
Os.34341.1.S1_at--748--9991Chr01:13761329..13761353 (25 bp)
TAGCCTGATGGCTGATGCAGTCTGA
LOC_Os01g24440
Os.34341.1.S1_at--35--7071Chr01:13761281..13761305 (25 bp)
GTAATCTCCATTGCAGCTACTGGCA
LOC_Os01g24440
Os.34341.1.S1_at--516--4851Chr01:13761266..13761290 (25 bp)
GCTACTGGCATTTGGGCATGCTTAA
LOC_Os01g24440
Target Sequence 
TGATCCCGTCTCTGGTGTCGGCGGATTCGTCACTCTTGTCTGAAATCCGCTGCCGCTTCTGTATATATGTACCTGCCTGT
GATTCTATAGGTTGGGGGGATTGGGATCTCTGTTCCGTGGTACTCGCTTCTGGCGAATCGTGGAACAGCCACAAATTCGT
CGAATTGAAACTGAAGAACAATTGAACATGACCTTTTATCTTCGTTTGTTGGACTCAAGATTGCTTGCTTAATGCAAATT
ACTTTAGGATGTAGCCTGATGGCTGATGCAGTCTGAATTCTTGTACATAGTAGTATTCTGTAATCTCCATTGCAGCTACT
GGCATTTGGGCATGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis