Browse Element(s) Details


Os.34936.1.S1_at

Description gb:AK069585.1
DB_XREF= gi:32979609
TID=Os.34936.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1146B04.18 (B1146B04.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022M24, full insert sequence.
FL= gb:AK069585.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2447011/11dual specificity protein phosphatase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24420OsAffx.23371.1.S1_x_at11/111+13747712..13754667expressed protein
LOC_Os01g24420OsAffx.29376.1.S1_x_at2/111+13747712..13754667expressed protein
LOC_Os01g24420OsAffx.22240.1.S1_x_at1/111+13747712..13754667expressed protein
LOC_Os01g24420OsAffx.266.1.S1_at1/111+13747712..13754667expressed protein
LOC_Os01g24420OsAffx.8338.1.S1_x_at1/111+13747712..13754667expressed protein
LOC_Os01g24430Os.32188.1.S1_at11/111+13757667..13759135expressed protein
LOC_Os01g24440Os.34341.1.S1_at11/111+13761245..13762267expressed protein
LOC_Os01g24450OsAffx.11188.1.S1_at11/111+13767344..13767661hypothetical protein
LOC_Os01g24460OsAffx.11189.1.S1_at11/111+13770948..13772366Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g24470Os.34936.2.S1_x_at11/111+13777335..13782372dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g24470Os.34936.1.S1_at11/111+13777335..13782372dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g24480Os.10306.2.S1_x_at11/111+13782436..13787245expressed protein
LOC_Os01g24490Os.52333.1.S1_at11/111+13790006..13792301expressed protein
LOC_Os01g24500OsAffx.22836.1.S1_at11/111+13797382..13799545hypothetical protein
LOC_Os01g24510Os.47463.1.S1_x_at6/111+13805243..13806237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24510Os.14491.2.S1_x_at5/111+13805243..13806237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24520NANA1+13806422..13807773transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008138molecular_functionprotein tyrosine/serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34936.1.S1_at--307--471Chr01:13781824..13781848 (25 bp)
ATCTCCCAGATCATGCGGCAATGTG
LOC_Os01g24470
Os.34936.1.S1_at--499--6931Chr01:13782035..13782059 (25 bp)
GTAGGCACTTTTTTGGCAACCTTGT
LOC_Os01g24470
Os.34936.1.S1_at--1113--8273Chr03:21061463..21061483 (21 bp)
GGCATCAATCTAAACAGCCCCTAGA
NONE
Os.34936.1.S1_at--410--1671Chr01:13782098..13782122 (25 bp)
AGCCCCTAGAATACGATTTGTGCAG
LOC_Os01g24470
Os.34936.1.S1_at--607--4891Chr01:13782170..13782194 (25 bp)
GCTTTTATCTCAACTTGTTCACCTG
LOC_Os01g24470
Os.34936.1.S1_at--659--6751Chr01:13782186..13782210 (25 bp)
GTTCACCTGCACAAGTTTCCTTTTG
LOC_Os01g24470
Os.34936.1.S1_at--482--1371Chr01:13782223..13782247 (25 bp)
AGAGCCTGTCTTAACTTCAGCGTTG
LOC_Os01g24470
Os.34936.1.S1_at--458--9671Chr01:13782239..13782263 (25 bp)
TCAGCGTTGTCTAATTTTGGTCCAT
LOC_Os01g24470
Os.34936.1.S1_at--1122--10231Chr01:13782254..13782278 (25 bp)
TTTGGTCCATGGTTCTGAGCAACGT
LOC_Os01g24470
Os.34936.1.S1_at--694--5951Chr01:13782270..13782294 (25 bp)
GAGCAACGTGGCCTGTACAACAATA
LOC_Os01g24470
Os.34936.1.S1_at--505--10071Chr01:13782293..13782317 (25 bp)
TAGTGATTCAGGTCTGGCTTGGCGA
LOC_Os01g24470
Target Sequence 
ATCTCCCAGATCATGCGGCAATGTGTTACTTCACTTTATGAGCAAAACTGTACTACACCTGAAATTTTGACCAAATTATA
TATATATAGGGGTTGTTCAGATTGTAGCCTAAATAAACCTTACCAAATTTTGGCATTGGCAAGTTGACAATATTACCAAA
ATTTTGACAAGATTCCTTATGTATTTACCAAATTTTGACAACAAACTAAATGTAGGCACTTTTTTGGCAACCTTGTTAAA
AATTGGTATGGTTGAAAATGGCATCAATCTAAACAGCCCCTAGAATACGATTTGTGCAGTGAGATGCCGAATTAGAGATG
ATTAGCATGATTCCGAAAGATTTTTCGCTTTTATCTCAACTTGTTCACCTGCACAAGTTTCCTTTTGTGGCTGAGTAAAA
GAGCCTGTCTTAACTTCAGCGTTGTCTAATTTTGGTCCATGGTTCTGAGCAACGTGGCCTGTACAACAATAGTGATTCAG
GTCTGGCTTGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis