Browse Element(s) Details


OsAffx.11189.1.S1_at

Description tigr:9629.m02364
TID=OsAffx.11189.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2446011/11Histone-like transcription factor and archaeal histone family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24420OsAffx.23371.1.S1_x_at11/111+13747712..13754667expressed protein
LOC_Os01g24420OsAffx.29376.1.S1_x_at2/111+13747712..13754667expressed protein
LOC_Os01g24420OsAffx.22240.1.S1_x_at1/111+13747712..13754667expressed protein
LOC_Os01g24420OsAffx.266.1.S1_at1/111+13747712..13754667expressed protein
LOC_Os01g24420OsAffx.8338.1.S1_x_at1/111+13747712..13754667expressed protein
LOC_Os01g24430Os.32188.1.S1_at11/111+13757667..13759135expressed protein
LOC_Os01g24440Os.34341.1.S1_at11/111+13761245..13762267expressed protein
LOC_Os01g24450OsAffx.11188.1.S1_at11/111+13767344..13767661hypothetical protein
LOC_Os01g24460OsAffx.11189.1.S1_at11/111+13770948..13772366Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g24470Os.34936.2.S1_x_at11/111+13777335..13782372dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g24470Os.34936.1.S1_at11/111+13777335..13782372dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g24480Os.10306.2.S1_x_at11/111+13782436..13787245expressed protein
LOC_Os01g24490Os.52333.1.S1_at11/111+13790006..13792301expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11189.1.S1_at--427--1991Chr01:13771768..13771792 (25 bp)
ACTCCAATGATGCTTGTGGTTCCAA
LOC_Os01g24460
OsAffx.11189.1.S1_at--479--7511Chr01:13771783..13771807 (25 bp)
GTGGTTCCAATAATAGTAGCGTAAT
LOC_Os01g24460
OsAffx.11189.1.S1_at--399--2731Chr01:13771819..13771843 (25 bp)
AAGCAAATATTGCTCCCTCTGGCCA
LOC_Os01g24460
OsAffx.11189.1.S1_at--486--3571Chr01:13771842..13771866 (25 bp)
CATTTTTATCCCATTGCCCTTCAGT
LOC_Os01g24460
OsAffx.11189.1.S1_at--858--3731Chr01:13771868..13771892 (25 bp)
CTCATGCTCGACGTTCTTACATAGT
LOC_Os01g24460
OsAffx.11189.1.S1_at--830--5631Chr01:13771902..13771926 (25 bp)
GACACGATTACTGCTATACTGGAGG
LOC_Os01g24460
OsAffx.11189.1.S1_at--940--6631Chr01:13771965..13771989 (25 bp)
GTTGATGCTGCTACAAAGGTTTTTA
LOC_Os01g24460
OsAffx.11189.1.S1_at--1003--6811Chr01:13772193..13772217 (25 bp)
GTTTCGGACACCAGGATTGCGTTCA
LOC_Os01g24460
OsAffx.11189.1.S1_at--296--10691Chr01:13772209..13772233 (25 bp)
TTGCGTTCAACAAAGACCCATTCCT
LOC_Os01g24460
OsAffx.11189.1.S1_at--963--6331Chr01:13772238..13772262 (25 bp)
GATGCTGTCTTGTCAAATCCAAGCA
LOC_Os01g24460
OsAffx.11189.1.S1_at--1102--3211Chr01:13772292..13772316 (25 bp)
CAAGTCTTATTCATCCCCTTTTGTA
LOC_Os01g24460
Target Sequence 
ACTCCAATGATGCTTGTGGTTCCAATAATAGTAGCGTAATTGTTGCAAATCAAGCAAATATTGCTCCCTCTGGCCATTTT
TATCCCATTGCCCTTCAGTCCTCATGCTCGACGTTCTTACATAGTAACAACAATGACACGATTACTGCTATACTGGAGGG
TGTAGATATTAGCGACATCATGCATGTTACAAGTGATGTTGATGCTGCTACAAAGGTTTTTAGTGGCCAAGAAGAACAAC
ATGAGAAAGAAACTAATGTTGAGTGGCATCATCAAAATGAGATATATGAAAGTATTGATATAAGAATCATCAATGCTACT
ACTAGAGATGGTAATAAATGTAGTATTAGCTGGGATGAATTGGGAATGGCCGATGATTCGTTGCTAGATAATTTTTTGGA
GGAGCTTCAAGTAAGAAAGGATGATGTTTCGGACACCAGGATTGCGTTCAACAAAGACCCATTCCTTGATGATGCTGTCT
TGTCAAATCCAAGCACCAGTAATGGCAACAAGTAAATGAGGTGGCAAGTCTTATTCATCCCCTTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis