Browse Element(s) Details


Os.38245.2.S1_at

Description gb:AK105168.1
DB_XREF= gi:32990377
TID=Os.38245.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lipase homolog (P0554D10.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-F02, full insert sequence.
FL= gb:AK105168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2264011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22600Os.27323.1.S1_at11/111+12687229..12692262mitochondrial substrate carrier family protein, putative, expressed
LOC_Os01g22600Os.27323.2.S1_x_at11/111+12687229..12692262mitochondrial substrate carrier family protein, putative, expressed
LOC_Os01g22609NANA1+12696084..12696424NA
LOC_Os01g22620Os.40855.5.S1_x_at4/111+12705632..12706909hypothetical protein
LOC_Os01g22630Os.1521.1.S2_at11/111+12707622..12714007YT521-B-like family protein, expressed
LOC_Os01g22630Os.1521.1.S1_at11/111+12707622..12714007YT521-B-like family protein, expressed
LOC_Os01g22640Os.38245.2.S1_x_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22640Os.38245.1.S1_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22640Os.38245.2.S1_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22650OsAffx.11160.1.S1_s_at11/111+12722094..12722522hypothetical protein
LOC_Os01g22660Os.1526.2.S1_x_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.1526.2.S1_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.1526.1.S1_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.24642.1.S1_at1/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22670NANA1+12728238..12729340Papain family cysteine protease containing protein
LOC_Os01g22680Os.8360.1.S1_at2/111+12734448..12735643Papain family cysteine protease containing protein
LOC_Os01g22700OsAffx.23343.1.S1_at11/111+12739416..12740069transporter, putative
LOC_Os01g22710OsAffx.23343.1.S1_at2/111+12740999..12742624major facilitator superfamily protein, expressed
LOC_Os01g22710Os.46485.1.S1_at1/111+12740999..12742624major facilitator superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38245.2.S1_at--194--531Chr01:12717255..12717279 (25 bp)
ATCGACTTCATCTGTCAGTCTCTCT
LOC_Os01g22640
Os.38245.2.S1_at--836--2052Chr03:2003449..2003469 (21 bp)
ACTTCATCTGTCAGTCTCTCTCTCT
NONE
Os.38245.2.S1_at--666--9511Chr01:12717279..12717303 (25 bp)
TCTCTCTTTTGCCACAATGCCACTC
LOC_Os01g22640
Os.38245.2.S1_at--876--9531Chr01:12717318..12717342 (25 bp)
TCTACTACTTCACCCTCTTCAATTT
LOC_Os01g22640
Os.38245.2.S1_at--1109--9891Chr01:12717320..12717344 (25 bp)
TACTACTTCACCCTCTTCAATTTCA
LOC_Os01g22640
Os.38245.2.S1_at--203--9571Chr01:12717333..12717357 (25 bp)
TCTTCAATTTCACCGCAGTCAAACT
LOC_Os01g22640
Os.38245.2.S1_at--500--9711Chr01:12717336..12717360 (25 bp)
TCAATTTCACCGCAGTCAAACTCCT
LOC_Os01g22640
Os.38245.2.S1_at--54--191Chr01:12717339..12717363 (25 bp)
ATTTCACCGCAGTCAAACTCCTACA
LOC_Os01g22640
Os.38245.2.S1_at--1150--9651Chr01:12717342..12717366 (25 bp)
TCACCGCAGTCAAACTCCTACAGTA
LOC_Os01g22640
Os.38245.2.S1_at--76--3931Chr01:12717346..12717370 (25 bp)
CGCAGTCAAACTCCTACAGTACATT
LOC_Os01g22640
Os.38245.2.S1_at--309--1171Chr01:12717349..12717373 (25 bp)
AGTCAAACTCCTACAGTACATTGAT
LOC_Os01g22640
Target Sequence 
ATCGACTTCATCTGTCAGTCTCTCTCTCTCTTTTGCCACAATGCCACTCCCACTCACCATCACTCTACTACTTCACCCTC
TTCAATTTCACCGCAGTCAAACTCCTACAGTACATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38245.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis