Browse Element(s) Details


Os.1521.1.S1_at

Description gb:AK073536.1
DB_XREF= gi:32983559
TID=Os.1521.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0554D10.20 (P0554D10.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041N22, full insert sequence.
FL= gb:AB059237.1 gb:AK073536.1 gb:AK107331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2263011/11YT521-B-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22590Os.29464.1.S1_at11/111+12684225..12687013transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g22600Os.27323.1.S1_at11/111+12687229..12692262mitochondrial substrate carrier family protein, putative, expressed
LOC_Os01g22600Os.27323.2.S1_x_at11/111+12687229..12692262mitochondrial substrate carrier family protein, putative, expressed
LOC_Os01g22609NANA1+12696084..12696424NA
LOC_Os01g22620Os.40855.5.S1_x_at4/111+12705632..12706909hypothetical protein
LOC_Os01g22630Os.1521.1.S2_at11/111+12707622..12714007YT521-B-like family protein, expressed
LOC_Os01g22630Os.1521.1.S1_at11/111+12707622..12714007YT521-B-like family protein, expressed
LOC_Os01g22640Os.38245.2.S1_x_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22640Os.38245.1.S1_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22640Os.38245.2.S1_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22650OsAffx.11160.1.S1_s_at11/111+12722094..12722522hypothetical protein
LOC_Os01g22660Os.1526.2.S1_x_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.1526.2.S1_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.1526.1.S1_at11/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22660Os.24642.1.S1_at1/111+12724557..12727990GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22670NANA1+12728238..12729340Papain family cysteine protease containing protein
LOC_Os01g22680Os.8360.1.S1_at2/111+12734448..12735643Papain family cysteine protease containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1521.1.S1_at--664--2491Chr01:12712708..12712732 (25 bp)
AACAGTGCTGTTCATGGCTCATCGA
LOC_Os01g22630
Os.1521.1.S1_at--918--4831Chr01:12712789..12712813 (25 bp)
GCTAACTGTAGCTCGGCAACTGTCA
LOC_Os01g22630
Os.1521.1.S1_at--924--8151Chr01:12712833..12712857 (25 bp)
GGAAACTATCGTTGCCAGAGTCAGT
LOC_Os01g22630
Os.1521.1.S1_at--773--6092Chr10:14647997..14648430 (25 bp)
GAGTCAGTTCTCTTGCTATCAGTTA
NONE
Os.1521.1.S1_at--487--10291Chr01:12712965..12712989 (25 bp)
TTTCCAATGTGGTCTGCTTTTCTTT
LOC_Os01g22630
Os.1521.1.S1_at--186--7872Chr01:12713015..12713039 (25 bp)
GGTATTACTTCTCATCATCATAGGT
LOC_Os01g22630
Os.1521.1.S1_at--1129--3551Chr01:12713030..12713054 (25 bp)
CATCATAGGTTGTCTGTCTTCTGTT
LOC_Os01g22630
Os.1521.1.S1_at--354--3651Chr01:12713047..12713071 (25 bp)
CTTCTGTTTAGTGTTGCTCGTCTTA
LOC_Os01g22630
Os.1521.1.S1_at--996--1231Chr01:12713120..12713144 (25 bp)
AGATTCTAGTAGTTCCCTGGTGGAG
LOC_Os01g22630
Os.1521.1.S1_at--592--8591Chr01:12713258..12713282 (25 bp)
TCGATTTGCTTTGTACGTGTTCCCA
LOC_Os01g22630
Os.1521.1.S1_at--1118--7411Chr01:12713274..12713298 (25 bp)
GTGTTCCCAGTAAAAGGCTTGCATG
LOC_Os01g22630
Target Sequence 
AACAGTGCTGTTCATGGCTCATCGAAAGCACATGAAAAGCATCTAAACGAATCAAAAGCACCTGAAAAGCATTCAAATGG
TGCTAACTGTAGCTCGGCAACTGTCAGTTTGAAGACAGCCAGAGAGGAAACTATCGTTGCCAGAGTCAGTTCTCTTGCTA
TCAGTTATCAGAATTCCTCAGTTGATGTCGTGAAGATTGGCTCNGATGCCNAGTTTTGGTTAACAAAGCTAATGTGTAGG
TGTGGTTCCTTTTTAAGCTTTTCCAATGTGGTCTGCTTTTCTTTTTTGCATTTAGCAGGGTCTGCTTCTGGTATTACTTC
TCATCATCATAGGTTGTCTGTCTTCTGTTTAGTGTTGCTCGTCTTAAATGTGGCAACGAAAATGAAAAGAGAAAGGAAAG
AAAAAAAACATCATAGATTCTAGTAGTTCCCTGGTGGAGAAATTTTGTTCTTTCTTTTGAAAGGAAGGAAAGGATGAATA
CAAGACGTACTCTCTAAACATATGAAGAGAAGAAAGTGATTTGGGACTGAATGGGTTCCCCAGTTTTGGCACTCGATTTG
CTTTGTACGTGTTCCCAGTAAAAGGCTTGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis