Browse Element(s) Details


Os.27323.1.S1_at

Description gb:AK101813.1
DB_XREF= gi:32987022
TID=Os.27323.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0554D10.15 (P0554D10.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033066P16, full insert sequence.
FL= gb:AK062175.1 gb:AK101813.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2260011/11mitochondrial substrate carrier family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22570NANA1+12664814..12665909Glycerol-3-phosphate acyltransferase 1, putative
LOC_Os01g22590Os.29464.1.S1_at11/111+12684225..12687013transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g22600Os.27323.1.S1_at11/111+12687229..12692262mitochondrial substrate carrier family protein, putative, expressed
LOC_Os01g22600Os.27323.2.S1_x_at11/111+12687229..12692262mitochondrial substrate carrier family protein, putative, expressed
LOC_Os01g22609NANA1+12696084..12696424NA
LOC_Os01g22620Os.40855.5.S1_x_at4/111+12705632..12706909hypothetical protein
LOC_Os01g22630Os.1521.1.S2_at11/111+12707622..12714007YT521-B-like family protein, expressed
LOC_Os01g22630Os.1521.1.S1_at11/111+12707622..12714007YT521-B-like family protein, expressed
LOC_Os01g22640Os.38245.2.S1_x_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22640Os.38245.1.S1_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22640Os.38245.2.S1_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27323.1.S1_at--443--7091Chr01:12687729..12687753 (25 bp)
GTCAAGCCGGAGTGATGAGCCTTTT
LOC_Os01g22600
Os.27323.1.S1_at--485--10751Chr01:12687675..12687699 (25 bp)
TTGAAGACCCACAATCCTTATCTGT
LOC_Os01g22600
Os.27323.1.S1_at--382--3671Chr01:12687659..12687683 (25 bp)
CTTATCTGTGATGGGCTGACGGCTA
LOC_Os01g22600
Os.27323.1.S1_at--295--5751Chr01:12687642..12687666 (25 bp)
GACGGCTATCTAGTGAGTTCTTCTC
LOC_Os01g22600
Os.27323.1.S1_at--1097--1531Chr01:12687524..12687548 (25 bp)
AGCTTAACAAGTTCCTCCTATACAC
LOC_Os01g22600
Os.27323.1.S1_at--163--1071Chr01:12687485..12687509 (25 bp)
AGGGTTCTGTATGAAGTTCTTCTGA
LOC_Os01g22600
Os.27323.1.S1_at--545--8731Chr01:12687443..12687467 (25 bp)
TGTAATAGCCTGAGGCTTGCCCTGG
LOC_Os01g22600
Os.27323.1.S1_at--846--7591Chr01:12687411..12687435 (25 bp)
GGGCAACATGTACGCGGCTCATAAA
LOC_Os01g22600
Os.27323.1.S1_at--969--10251Chr01:12687361..12687385 (25 bp)
TTTGTATCTCTTTCCATGAGGCAAC
LOC_Os01g22600
Os.27323.1.S1_at--570--671Chr01:12687346..12687370 (25 bp)
ATGAGGCAACAAATTCCCACGGTAT
LOC_Os01g22600
Os.27323.1.S1_at--231--111Chr01:12687287..12687311 (25 bp)
ATTCTAGCTAGCCACGGTCTTGAGA
LOC_Os01g22600
Target Sequence 
GTCAAGCCGGAGTGATGAGCCTTTTGGCTTCTGTTCCAAATAGATGGTGTAATCTTGAAGACCCACAATCCTTATCTGTG
ATGGGCTGACGGCTATCTAGTGAGTTCTTCTCAAGAAAGGGATTTGGAAAGTAACAAAATCCAATCAAGAAGTTTTAGTG
ATGGAAACTGTTTTATAACTACAGGGGAAGTATTAGCAAGTTAGTAGCTTAACAAGTTCCTCCTATACACTGTAAATATT
TACTAGGGTTCTGTATGAAGTTCTTCTGAAGGTGCTTCATCCAGGATGTAATAGCCTGAGGCTTGCCCTGGCTACTGGGG
GCAACATGTACGCGGCTCATAAAACCCTAAAAATTTTGGCAATGAGCTTTTGTATCTCTTTCCATGAGGCAACAAATTCC
CACGGTATNTCGCTTGGTTTAATTTGTTATCATTTTTAGCAGATTCTAGCTAGCCACGGTCTTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis