Browse Element(s) Details


Os.27323.2.S1_x_at

Description gb:NM_183848.1
DB_XREF= gi:34894823
GEN=P0554D10.15
TID=Os.27323.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0554D10.15 (P0554D10.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0554D10.15 (P0554D10.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2260011/11mitochondrial substrate carrier family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22570NANA1+12664814..12665909Glycerol-3-phosphate acyltransferase 1, putative
LOC_Os01g22590Os.29464.1.S1_at11/111+12684225..12687013transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g22600Os.27323.1.S1_at11/111+12687229..12692262mitochondrial substrate carrier family protein, putative, expressed
LOC_Os01g22600Os.27323.2.S1_x_at11/111+12687229..12692262mitochondrial substrate carrier family protein, putative, expressed
LOC_Os01g22609NANA1+12696084..12696424NA
LOC_Os01g22620Os.40855.5.S1_x_at4/111+12705632..12706909hypothetical protein
LOC_Os01g22630Os.1521.1.S2_at11/111+12707622..12714007YT521-B-like family protein, expressed
LOC_Os01g22630Os.1521.1.S1_at11/111+12707622..12714007YT521-B-like family protein, expressed
LOC_Os01g22640Os.38245.2.S1_x_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22640Os.38245.1.S1_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g22640Os.38245.2.S1_at11/111+12716579..12720574GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27323.2.S1_x_at--340--7451Chr01:12689996..12690020 (25 bp)
GTGTCAAGTATATTCTCAAGCGCAT
LOC_Os01g22600
Os.27323.2.S1_x_at--172--2311Chr01:12689447..12689471 (25 bp)
AAAGGCTCATGGCTCAAGGACTACC
LOC_Os01g22600
Os.27323.2.S1_x_at--436--8131Chr01:12689430..12689454 (25 bp)
GGACTACCAGGGATGGCCACATACA
LOC_Os01g22600
Os.27323.2.S1_x_at--688--4391Chr01:12689415..12689439 (25 bp)
GCCACATACAGAGGCCCATTTGATG
LOC_Os01g22600
Os.27323.2.S1_x_at--859--10291Chr01:12689351..12689375 (25 bp)
TTTACCGCGGTTTTGGAATCACCAT
LOC_Os01g22600
Os.27323.2.S1_x_at--166--9491Chr01:12689307..12689331 (25 bp)
TCTGCCCTTTGGTGGAGTTCATATG
LOC_Os01g22600
Os.27323.2.S1_x_at--803--7731Chr01:12689283..12689307 (25 bp)
GGTGGTGCTCAACATGCCATATGGA
LOC_Os01g22600
Os.27323.2.S1_x_at--1025--2231Chr01:12689085..12689109 (25 bp)
ACAATAGCTGGTGCTTGCTCATCAA
LOC_Os01g22600
Os.27323.2.S1_x_at--851--7591Chr01:12687953..12687977 (25 bp)
GGGCAGGCCATCTGTCATGAAAACC
LOC_Os01g22600
Os.27323.2.S1_x_at--1097--2631Chr01:12687932..12687956 (25 bp)
AACCACCAGGGTGCTGCTAGAGGAA
LOC_Os01g22600
Os.27323.2.S1_x_at--235--3971Chr01:12687871..12687895 (25 bp)
CGGTTTCTCAACATGTCCCTGTGGG
LOC_Os01g22600
Target Sequence 
GTGTCAAGTATATTCTCAAGCGCATATTTTGTGCCATTAGATGTGATTTGCCAAAGGCTCATGGCTCAAGGACTACCAGG
GATGGCCACATACAGAGGCCCATTTGATGTGATAAGCAAGGTTGTCAGGACTGAGGGGCTCCGGGGCCTTTACCGCGGTT
TTGGAATCACCATGTTGACTCAATCTCCAGCCTCTGCCCTTTGGTGGAGTTCATATGGTGGTGCTCAACATGCCATATGG
AGGAGCTTGGGTTATGGAATTGATTCACAAAAGAAACCATCTCAATCAGAACTAGTTGTCGTTCAAGCAACTGCTGGAAC
AATAGCTGGTGCTTGCTCATCAATAATCACGACACCAATCGATACCATTAAGACACGACTTCAGGTGATGGATAACTATG
GTAGGGGCAGGCCATCTGTCATGAAAACCACCAGGGTGCTGCTAGAGGAAGATGGCTGGAGAGGTTTCTACAGGGGGTTT
GGACCGCGGTTTCTCAACATGTCCCTGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27323.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis