Browse Element(s) Details


Os.29464.1.S1_at

Description gb:AK110223.1
DB_XREF= gi:32995432
TID=Os.29464.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29464 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative polygalacturonase PG2 (P0554D10.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-162-E03, full insert sequence.
FL= gb:AK110223.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2259011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22560Os.11128.1.S1_at2/111+12659818..12660612Acyltransferase family protein, expressed
LOC_Os01g22570NANA1+12664814..12665909Glycerol-3-phosphate acyltransferase 1, putative
LOC_Os01g22590Os.29464.1.S1_at11/111+12684225..12687013transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g22600Os.27323.1.S1_at11/111+12687229..12692262mitochondrial substrate carrier family protein, putative, expressed
LOC_Os01g22600Os.27323.2.S1_x_at11/111+12687229..12692262mitochondrial substrate carrier family protein, putative, expressed
LOC_Os01g22609NANA1+12696084..12696424NA
LOC_Os01g22620Os.40855.5.S1_x_at4/111+12705632..12706909hypothetical protein
LOC_Os01g22630Os.1521.1.S2_at11/111+12707622..12714007YT521-B-like family protein, expressed
LOC_Os01g22630Os.1521.1.S1_at11/111+12707622..12714007YT521-B-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29464.1.S1_at--1109--8791Chr01:12686467..12686491 (25 bp)
TGTTCGACGCCGTCCAGATGGTGAA
LOC_Os01g22590
Os.29464.1.S1_at--1103--1171Chr01:12686518..12686542 (25 bp)
AGTACTACTGCGATGCGCACGGCGG
LOC_Os01g22590
Os.29464.1.S1_at--496--4071Chr01:12686768..12686792 (25 bp)
CGACCCGTACTGCTGGAACGCGTAC
LOC_Os01g22590
Os.29464.1.S1_at--152--8211Chr01:12686837..12686861 (25 bp)
GGAAGGTCGCCCAGAGTCGCTGCAA
LOC_Os01g22590
Os.29464.1.S1_at--166--6111Chr01:12686850..12686874 (25 bp)
GAGTCGCTGCAAGATCAGCTCGCAA
LOC_Os01g22590
Os.29464.1.S1_at--714--6911Chr01:12686886..12686910 (25 bp)
GTAGCAGACATGACATGCCTCTTCT
LOC_Os01g22590
Os.29464.1.S1_at--260--5671Chr01:12686897..12686921 (25 bp)
GACATGCCTCTTCTTTTGACAATAG
LOC_Os01g22590
Os.29464.1.S1_at--341--5611Chr01:12686914..12686938 (25 bp)
GACAATAGATTTCTTCTCCGCGATT
LOC_Os01g22590
Os.29464.1.S1_at--828--10571Chr01:12686927..12686951 (25 bp)
TTCTCCGCGATTCATGCTAATCTAT
LOC_Os01g22590
Os.29464.1.S1_at--1133--6511Chr01:12686953..12686977 (25 bp)
GATTTTCTTTCTCAACGATTAACTA
LOC_Os01g22590
Os.29464.1.S1_at--38--2511Chr01:12686979..12687003 (25 bp)
AACTAACTTTTGAGTCATCCAGACT
LOC_Os01g22590
Target Sequence 
TGTTCGACGCCGTCCAGATGGTGAACGTCAGGGGCTGCATCGTCATCGACCAGTACTACTGCGATGCGCACGGCGGCGCC
GGCGCCGGCTGCGCCAACCAGACCGCCGCCGTGCGCGTCGACGGCGTCGCGTACAGGGGGATCCGCGGCACGTACAACCC
GCGCGGCGGCGGCGGCGCGCCGGTGCGCTTCGCGTGCAGCGACACCGTCGCCTGCACGGGCATCACCATGACCGACGTCG
AGCTGCTGCCGGCCGGCGGCGGCGACGAAGGCGGCGGTGCCAGCGCCGGCGCGAAGCTGGCCGACCCGTACTGCTGGAAC
GCGTACGGGGTGATGGAGACGCTGACGCAGCCGCCGGTGCACTGCCTGCAGGAAGGTCGCCCAGAGTCGCTGCAAGATCA
GCTCGCAAGCTGCTGAGCAGTAGCAGACATGACATGCCTCTTCTTTTGACAATAGATTTCTTCTCCGCGATTCATGCTAA
TCTATAGATTTTCTTTCTCAACGATTAACTATAACTAACTTTTGAGTCATCCAGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis