Browse Element(s) Details


Os.11128.1.S1_at

Description gb:AK071961.1
DB_XREF= gi:32981984
TID=Os.11128.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0554D10.9 (P0554D10.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013077G18, full insert sequence.
FL= gb:AK071961.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g225602/11Acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22510OsAffx.1782.2.S1_at11/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22510Os.1505.1.S1_x_at9/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22520Os.1506.1.S1_at10/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22520OsAffx.26764.1.S1_x_at1/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22530OsAffx.23340.1.S1_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22530OsAffx.23340.1.S1_x_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22540OsAffx.23341.2.S1_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_s_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_at4/111+12647201..12647921hypothetical protein
LOC_Os01g22550Os.53990.1.S1_at11/111+12649850..12655220Galactosyltransferase family protein, expressed
LOC_Os01g22560Os.11128.1.S1_at2/111+12659818..12660612Acyltransferase family protein, expressed
LOC_Os01g22570NANA1+12664814..12665909Glycerol-3-phosphate acyltransferase 1, putative
LOC_Os01g22590Os.29464.1.S1_at11/111+12684225..12687013transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11128.1.S1_at--649--9451Chr01:12660108..12660132 (25 bp)
TCGGCGGTGTCCATGTTCCACGGCA
LOC_Os01g22560
Os.11128.1.S1_at--1055--9931Chr01:12660021..12660045 (25 bp)
TACGTCGTGCAGCTCCTGGATCCCG
LOC_Os01g22560
Os.11128.1.S1_at--714--4471Chr01:12659715..12659739 (25 bp)
GCCTGGCTTGGCGTAATTAGGAAGC
NONE
Os.11128.1.S1_at--781--8651Chr01:12659668..12659692 (25 bp)
TGTGTAAGACACACCCCGGTTGTGC
NONE
Os.11128.1.S1_at--957--4251Chr01:12659653..12659677 (25 bp)
CCGGTTGTGCTCAGTTGTAACTTGT
NONE
Os.11128.1.S1_at--530--8031Chr01:12659625..12659649 (25 bp)
GGAGTTACTCATACTGTACTCCCTC
NONE
Os.11128.1.S1_at--753--9913Chr04:25468648..25468928 (25 bp)
TACTCCCTCCCTCTGTCTTAAAATT
NONE
Os.11128.1.S1_at--788--9831Chr01:12659585..12659609 (25 bp)
TAAATTAACATTTTGGGACCGAGAG
NONE
Os.11128.1.S1_at--1082--10671Chr01:12659573..12659597 (25 bp)
TTGGGACCGAGAGAGTAACTTGTAC
NONE
Os.11128.1.S1_at--690--7051Chr01:12659559..12659583 (25 bp)
GTAACTTGTACGAGACATTGATGTT
NONE
Os.11128.1.S1_at--977--10173Chr11:1560127..1560146 (20 bp)
TATAAGTGGTGTTCTTTTATCCTCT
NONE
Target Sequence 
TCGGCGGTGTCCATGTTCCACGGCACGACGGCGGGGGGGTGGAAGCTGCTCGACCCGCTCTACCTGCTCATGAACCCCAC
GCCGGCCTACGTCGTGCAGCTCCTGGATCCCGTCGCCGTCGGAGGCGAGGGCGGCGGCGGCGGACCGGAGTTGGCGAACG
AGGTGCAGCGGCGGATCGCGGAGGCGCTGGGGTACACGCGCACGGCGCTGACGAGGAGGGACAAGTACCTCGCCCTCACC
GGCAACGATGGCGGCGTCGATCGGCGCCGCNTNNNNGNNNGNNNNCNNCNNNNNGNNNNNNNNNTNNNNNGNTNNTGCCT
GGCTTGGCGTAATTAGGAAGCTTAATTACCCAGTTAAACAAGGTGTGTAAGACACACCCCGGTTGTGCTCAGTTGTAACT
TGTAATGGAGTTACTCATACTGTACTCCCTCCCTCTGTCTTAAAATTAAATTAACATTTTGGGACCGAGAGAGTAACTTG
TACGAGACATTGATGTTTATTATTTATATAAGTGGTGTTCTTTTATCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis