Browse Element(s) Details


Os.1505.1.S1_x_at

Description gb:NM_183835.1
DB_XREF= gi:34894797
GEN=P0537A05.26
TID=Os.1505.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1505 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0537A05.26 (P0537A05.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0537A05.26 (P0537A05.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g225109/11Streptomyces cyclase/dehydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22450OsAffx.11158.1.S1_at8/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_x_at5/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_at4/111+12610507..12612419hypothetical protein
LOC_Os01g22480Os.33000.1.S1_x_at11/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22480Os.33000.1.S2_at10/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22490Os.28209.2.S1_at11/111+12628070..12628889ubiquitin, putative, expressed
LOC_Os01g22500Os.1574.1.S1_at11/111+12629067..12632493Bucentaur or craniofacial development family protein, expressed
LOC_Os01g22510OsAffx.1782.2.S1_at11/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22510Os.1505.1.S1_x_at9/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22520Os.1506.1.S1_at10/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22520OsAffx.26764.1.S1_x_at1/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22530OsAffx.23340.1.S1_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22530OsAffx.23340.1.S1_x_at11/111+12643396..12643882hypothetical protein
LOC_Os01g22540OsAffx.23341.2.S1_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_s_at11/111+12647201..12647921hypothetical protein
LOC_Os01g22540OsAffx.23341.1.S1_at4/111+12647201..12647921hypothetical protein
LOC_Os01g22550Os.53990.1.S1_at11/111+12649850..12655220Galactosyltransferase family protein, expressed
LOC_Os01g22560Os.11128.1.S1_at2/111+12659818..12660612Acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1505.1.S1_x_at--428--1711Chr01:12635606..12635630 (25 bp)
ACCAGATCAATCACGTTGGACTTTG
LOC_Os01g22510
Os.1505.1.S1_x_at--812--6251Chr01:12635652..12635676 (25 bp)
GATGTAGAATTTTCGTGGCTAGCTC
LOC_Os01g22510
Os.1505.1.S1_x_at--6--8491Chr01:12635667..12635687 (21 bp)
TGGCTAGCTCGAAACATGACACTGA
LOC_Os01g22510
Os.1505.1.S1_x_at--867--5531NONE
GAAACATGACACTGACGGTGGCTTA
NONE
Os.1505.1.S1_x_at--722--5751Chr01:12636274..12636298 (25 bp)
GACGGTGGCTTATGAAGTTCCTGAA
LOC_Os01g22510
Os.1505.1.S1_x_at--1034--5331Chr01:12636287..12636311 (25 bp)
GAAGTTCCTGAAATTTTGGCACCTG
LOC_Os01g22510
Os.1505.1.S1_x_at--588--3131NONE
AATTTTGGCACCTGTTGCGTCAGCA
NONE
Os.1505.1.S1_x_at--215--4651Chr01:12636314..12636439 (25 bp)
GCGTCAGCACTGAAGCCATTTCTGG
LOC_Os01g22510
Os.1505.1.S1_x_at--3--4451Chr01:12636429..12636453 (25 bp)
GCCATTTCTGGAAGGGCTGCTTATG
LOC_Os01g22510
Os.1505.1.S1_x_at--569--7551Chr01:12636442..12636466 (25 bp)
GGGCTGCTTATGCAAGGTTTAGAAC
LOC_Os01g22510
Os.1505.1.S1_x_at--1134--1431Chr01:12636462..12636486 (25 bp)
AGAACGTTTCGCGACGTTTGCGAAG
LOC_Os01g22510
Target Sequence 
ACCAGATCAATCACGTTGGACTTTGAAGTATGAGATACTTGGTCGAGATGTAGAATTTTCGTGGCTAGCTCGAAACATGA
CACTGACGGTGGCTTATGAAGTTCCTGAAATTTTGGCACCTGTTGCGTCAGCACTGAAGCCATTTCTGGAAGGGCTGCTT
ATGCAAGGTTTAGAACGTTTCGCGACGTTTGCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1505.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis