Browse Element(s) Details


OsAffx.11158.1.S1_at

Description tigr:9629.m02156
TID=OsAffx.11158.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g224508/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22420NANA1+12586116..12592274transposon protein, putative, unclassified
LOC_Os01g22430Os.27350.1.A1_at6/111+12597767..12599726F-box domain containing protein
LOC_Os01g22440OsAffx.11157.1.S1_at3/111+12603727..12604185hypothetical protein
LOC_Os01g22450OsAffx.11158.1.S1_at8/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_x_at5/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_at4/111+12610507..12612419hypothetical protein
LOC_Os01g22480Os.33000.1.S1_x_at11/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22480Os.33000.1.S2_at10/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22490Os.28209.2.S1_at11/111+12628070..12628889ubiquitin, putative, expressed
LOC_Os01g22500Os.1574.1.S1_at11/111+12629067..12632493Bucentaur or craniofacial development family protein, expressed
LOC_Os01g22510OsAffx.1782.2.S1_at11/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22510Os.1505.1.S1_x_at9/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22520Os.1506.1.S1_at10/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22520OsAffx.26764.1.S1_x_at1/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11158.1.S1_at--71--9991NONE
TACCAGAGAAGAGGGCCATGGAGAA
NONE
OsAffx.11158.1.S1_at--1019--4331Chr01:12611405..12611429 (25 bp)
CCATGGAGAACAAGCACAATTTGAT
LOC_Os01g22450
OsAffx.11158.1.S1_at--658--5971Chr01:12611410..12611434 (25 bp)
GAGAACAAGCACAATTTGATTTCAG
LOC_Os01g22450
OsAffx.11158.1.S1_at--646--211Chr01:12611423..12611447 (25 bp)
ATTTGATTTCAGAGCCAACAAGACC
LOC_Os01g22450
OsAffx.11158.1.S1_at--871--10511Chr01:12611430..12611454 (25 bp)
TTCAGAGCCAACAAGACCTGTCCCT
LOC_Os01g22450
OsAffx.11158.1.S1_at--208--2451Chr01:12611439..12611463 (25 bp)
AACAAGACCTGTCCCTCTCACTAGT
LOC_Os01g22450
OsAffx.11158.1.S1_at--238--3331Chr01:12611457..12611481 (25 bp)
CACTAGTCACCACCTAGCTAAATGG
LOC_Os01g22450
OsAffx.11158.1.S1_at--168--10071Chr01:12611460..12611482 (23 bp)
TAGTCACCACCTAGCTAAATGGTTT
LOC_Os01g22450
OsAffx.11158.1.S1_at--31--7051Chr01:12611462..12611482 (21 bp)
GTCACCACCTAGCTAAATGGTTTCA
LOC_Os01g22450
OsAffx.11158.1.S1_at--958--4351NONE
CCACCTAGCTAAATGGTTTCAAGTT
NONE
OsAffx.11158.1.S1_at--73--1551NONE
AGCTAAATGGTTTCAAGTTCTACGC
NONE
Target Sequence 
TACCAGAGAAGAGGGCCATGGAGAACAAGCACAATTTGATTTCAGAGCCAACAAGACCTGTCCCTCTCACTAGTCACCAC
CTAGCTAAATGGTTTCAAGTTCTACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis