Browse Element(s) Details


OsAffx.26764.1.S1_x_at

Description tigr:9633.m00598
TID=OsAffx.26764.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0675011/11Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g225201/11Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os03g459901/11ferric leghemoglobin reductase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06730OsAffx.4264.1.S1_at11/115+3490294..3490563hypothetical protein
LOC_Os05g06740OsAffx.26763.1.S1_at11/115+3493623..3496463hypothetical protein
LOC_Os05g06750OsAffx.26764.1.S1_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06750OsAffx.26764.1.S1_x_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06750Os.8443.1.S1_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06760Os.6307.1.S1_at11/115+3509490..3512896macrophage erythroblast attacher, putative, expressed
LOC_Os05g06770Os.37856.1.S1_at11/115+3513361..3514176ubiquitin, putative, expressed
LOC_Os05g06780Os.12266.1.S1_at11/115+3517583..3518969protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os05g06790OsAffx.26765.1.S1_s_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06790OsAffx.26765.1.S1_at11/115+3524374..3527965hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009570cellular_componentchloroplast stroma
GO:0004148molecular_functiondihydrolipoyl dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26764.1.S1_x_at--267--2171Chr05:3507411..3507435 (25 bp)
ACACCTCTGGTCTTGGATTGAACGC
LOC_Os05g06750
OsAffx.26764.1.S1_x_at--1130--5431Chr05:3507430..3507454 (25 bp)
GAACGCCCTTGGTGTTGAGACTGAC
LOC_Os05g06750
OsAffx.26764.1.S1_x_at--25--31Chr05:3507515..3507539 (25 bp)
ATTGGAGATGCGATCCCTGGACCCA
LOC_Os05g06750
OsAffx.26764.1.S1_x_at--621--4271Chr05:3507530..3507554 (25 bp)
CCTGGACCCATGCTTGCACATAAAG
LOC_Os05g06750
OsAffx.26764.1.S1_x_at--719--6252Chr05:3507563..3507587 (25 bp)
GATGGTGTTGCCTGTGTTGAATTCA
LOC_Os05g06750
OsAffx.26764.1.S1_x_at--243--6951Chr05:3507608..3507632 (25 bp)
GTAGATTATGACACTGTACCTGGAG
LOC_Os05g06750
OsAffx.26764.1.S1_x_at--887--8272Chr05:3507688..3507712 (25 bp)
GGCATCAGGAGTGGCCTACCAGGTT
LOC_Os05g06750
OsAffx.26764.1.S1_x_at--1046--3751Chr05:3507809..3507833 (25 bp)
CTCGGTGTACATATAATGGCCCCTA
LOC_Os05g06750
OsAffx.26764.1.S1_x_at--94--6471Chr05:3507844..3507868 (25 bp)
GATAATCCATGAGGCGGTGCTTGCA
LOC_Os05g06750
OsAffx.26764.1.S1_x_at--394--6511Chr05:3507893..3507917 (25 bp)
GATATTGCACGGACATGCCATGCGC
LOC_Os05g06750
OsAffx.26764.1.S1_x_at--697--591Chr05:3507907..3507931 (25 bp)
ATGCCATGCGCATCCAACAGTGAGC
LOC_Os05g06750
Target Sequence 
ACACCTCTGGTCTTGGATTGAACGCCCTTGGTGTTGAGACTGACAAGGGTGGAAGAATCCTTGTCGACAAGCGCTTTATG
ACAAATGTTAAGGGTGTTTATGCGATTGGAGATGCGATCCCTGGACCCATGCTTGCACATAAAGCTGAAGAAGATGGTGT
TGCCTGTGTTGAATTCATCGCAGGTAAAGAAGGTCACGTAGATTATGACACTGTACCTGGAGTGGTGTACACACACCCAG
AGGTGGCTTCTGTTGGGAAGACGGAAGAACAGGTCAAGGCATCAGGAGTGGCCTACCAGGTTGGGAAGTTCCCCCTGTTG
GCCAACAGCCGTGCAAAGGCAATTGATGATGCTGAAGGGTTGGTCAAGGTAGTGGCTGAGAAGGAGACCGATAGAATCCT
CGGTGTACATATAATGGCCCCTAATGCAGGTGAGATAATCCATGAGGCGGTGCTTGCACTTCAGTATGGAGCATCTAGTG
AGGATATTGCACGGACATGCCATGCGCATCCAACAGTGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26764.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis