Browse Element(s) Details


Os.6307.1.S1_at

Description gb:AK073554.1
DB_XREF= gi:32983577
TID=Os.6307.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044H19, full insert sequence.
FL= gb:AK073554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0676011/11macrophage erythroblast attacher, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06730OsAffx.4264.1.S1_at11/115+3490294..3490563hypothetical protein
LOC_Os05g06740OsAffx.26763.1.S1_at11/115+3493623..3496463hypothetical protein
LOC_Os05g06750OsAffx.26764.1.S1_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06750OsAffx.26764.1.S1_x_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06750Os.8443.1.S1_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06760Os.6307.1.S1_at11/115+3509490..3512896macrophage erythroblast attacher, putative, expressed
LOC_Os05g06770Os.37856.1.S1_at11/115+3513361..3514176ubiquitin, putative, expressed
LOC_Os05g06780Os.12266.1.S1_at11/115+3517583..3518969protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os05g06790OsAffx.26765.1.S1_s_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06790OsAffx.26765.1.S1_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06800OsAffx.14572.1.S1_at10/115+3537069..3538126hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6307.1.S1_at--964--5671Chr05:3512121..3512145 (25 bp)
GACATTGGAGCCGTTGCTGAACATC
LOC_Os05g06760
Os.6307.1.S1_at--973--9011Chr05:3512150..3512174 (25 bp)
TGCAAGCAGGGCTCACAGCTCTGAA
LOC_Os05g06760
Os.6307.1.S1_at--454--8991Chr05:3512171..3512294 (25 bp)
TGAAGACACCATTCTGCTTCGATGG
LOC_Os05g06760
Os.6307.1.S1_at--837--4891Chr05:3512285..3512309 (25 bp)
GCTTCGATGGTAACTGCCCCAAAGA
LOC_Os05g06760
Os.6307.1.S1_at--360--5091Chr05:3512370..3512394 (25 bp)
GCACCATTCAAAGCTTGTCTGCTAC
LOC_Os05g06760
Os.6307.1.S1_at--401--9391Chr05:3512432..3512456 (25 bp)
TCGTTTTCCCGAATGGCTATGTTTA
LOC_Os05g06760
Os.6307.1.S1_at--931--1011Chr05:3512627..3512651 (25 bp)
AGGTTACATGCCCTCGGACAGGAGA
LOC_Os05g06760
Os.6307.1.S1_at--184--971Chr05:3512646..3512670 (25 bp)
AGGAGACATCTGCAACTACACCGAT
LOC_Os05g06760
Os.6307.1.S1_at--242--2611Chr05:3512701..3512725 (25 bp)
AACGCGTGTGGATCTCATCTGGGAA
LOC_Os05g06760
Os.6307.1.S1_at--934--2751Chr05:3512724..3512748 (25 bp)
AAGACACTGATTTGCGCGGGTGATC
LOC_Os05g06760
Os.6307.1.S1_at--575--8851Chr05:3512744..3512768 (25 bp)
TGATCTGCACCCTGAATGCTTGTAC
LOC_Os05g06760
Target Sequence 
GACATTGGAGCCGTTGCTGAACATCTATATGCAAGCAGGGCTCACAGCTCTGAAGACACCATTCTGCTTCGATGGTAACT
GCCCCAAAGAAGACCCCTTATCCCTGCCTGGCTTCCGGAAACTAGCAGAGCCGCTTCCATTCTCCAAGCAGCACCATTCA
AAGCTTGTCTGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAG
CACCAAGGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGGACAGGAGACATCTGCAACTACA
CCGATCTCGTCAAGGCCTACATATCATGATCACACAACGCGTGTGGATCTCATCTGGGAAGACACTGATTTGCGCGGGTG
ATCTGCACCCTGAATGCTTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis