Browse Element(s) Details


Os.37856.1.S1_at

Description gb:L31941.1
DB_XREF= gi:967984
TID=Os.37856.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37856 (NCBI UniGene Cluster)
DEF=Oryza sativa (clone rma630) ribosomal protein-linked ubiquitin mRNA, complete cds.
PROD=ribosomal protein-linked ubiquitin
FL= gb:L31941.1 gb:AK119731.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0677011/11ubiquitin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06730OsAffx.4264.1.S1_at11/115+3490294..3490563hypothetical protein
LOC_Os05g06740OsAffx.26763.1.S1_at11/115+3493623..3496463hypothetical protein
LOC_Os05g06750OsAffx.26764.1.S1_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06750OsAffx.26764.1.S1_x_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06750Os.8443.1.S1_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06760Os.6307.1.S1_at11/115+3509490..3512896macrophage erythroblast attacher, putative, expressed
LOC_Os05g06770Os.37856.1.S1_at11/115+3513361..3514176ubiquitin, putative, expressed
LOC_Os05g06780Os.12266.1.S1_at11/115+3517583..3518969protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os05g06790OsAffx.26765.1.S1_s_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06790OsAffx.26765.1.S1_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06800OsAffx.14572.1.S1_at10/115+3537069..3538126hypothetical protein
LOC_Os05g06814OsAffx.26765.1.S1_s_at11/115+3539045..3549382expressed protein
LOC_Os05g06814Os.9920.1.S1_at11/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.14573.1.S1_at7/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.26765.1.S1_at3/115+3539045..3549382expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0009733biological_processresponse to auxin stimulus
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0045116biological_processprotein neddylation
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37856.1.S1_at--176--1731Chr05:3513776..3513800 (25 bp)
ACCAGGCTCAGGAAGGAGTGCCCCA
LOC_Os05g06770
Os.37856.1.S1_at--998--1891Chr05:3513876..3513900 (25 bp)
ACGTCTACAACCAGAAGGCCTAGGT
LOC_Os05g06770
Os.37856.1.S1_at--151--891Chr05:3513891..3513915 (25 bp)
AGGCCTAGGTTGATGCTTGCTGCTG
LOC_Os05g06770
Os.37856.1.S1_at--727--9111Chr05:3513908..3513932 (25 bp)
TGCTGCTGCTCGCTTTGCTCTGATC
LOC_Os05g06770
Os.37856.1.S1_at--593--4891Chr05:3513937..3513961 (25 bp)
GCTTTTCATTCCCTTTTATCTGTTA
LOC_Os05g06770
Os.37856.1.S1_at--489--3591Chr05:3513943..3513967 (25 bp)
CATTCCCTTTTATCTGTTATTATCA
LOC_Os05g06770
Os.37856.1.S1_at--417--10431Chr05:3513952..3513976 (25 bp)
TTATCTGTTATTATCATGAGCTGAG
LOC_Os05g06770
Os.37856.1.S1_at--1015--3831Chr05:3513982..3514006 (25 bp)
CTGCTGCTGGTTACATGTTATTCAG
LOC_Os05g06770
Os.37856.1.S1_at--547--6551Chr05:3514006..3514030 (25 bp)
GATTATATGCGTTTTGTTCTCCGTT
LOC_Os05g06770
Os.37856.1.S1_at--713--251Chr05:3514010..3514034 (25 bp)
ATATGCGTTTTGTTCTCCGTTTACA
LOC_Os05g06770
Os.37856.1.S1_at--717--4631Chr05:3514014..3514038 (25 bp)
GCGTTTTGTTCTCCGTTTACAATTG
LOC_Os05g06770
Target Sequence 
ACCAGGCTCAGGAAGGAGTGCCCCAACAACGACTGCGGCNGCGGGCACCTTCATGGCCAACCACTTCGATCGCCACTACT
GCGGCAAGTGCGGCCTCACCTACGTCTACAACCAGAAGGCCTAGGTTGATGCTTGCTGCTGCTCGCTTTGCTCTGATCTG
ATGNGCTTTTCATTCCCTTTTATCTGTTATTATCATGAGCTGAGATGAGCTGCTGCTGGTTACATGTTATTCAGATTATA
TGCGTTTTGTTCTCCGTTTACAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis