Browse Element(s) Details


Os.9920.1.S1_at

Description gb:AK069632.1
DB_XREF= gi:32979656
TID=Os.9920.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9920 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024E20, full insert sequence.
FL= gb:AK069632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0681411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06770Os.37856.1.S1_at11/115+3513361..3514176ubiquitin, putative, expressed
LOC_Os05g06780Os.12266.1.S1_at11/115+3517583..3518969protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os05g06790OsAffx.26765.1.S1_s_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06790OsAffx.26765.1.S1_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06800OsAffx.14572.1.S1_at10/115+3537069..3538126hypothetical protein
LOC_Os05g06814OsAffx.26765.1.S1_s_at11/115+3539045..3549382expressed protein
LOC_Os05g06814Os.9920.1.S1_at11/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.14573.1.S1_at7/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.26765.1.S1_at3/115+3539045..3549382expressed protein
LOC_Os05g06830OsAffx.14574.1.S1_at10/115+3555866..3557448hypothetical protein
LOC_Os05g06830OsAffx.6962.1.S1_at1/115+3555866..3557448hypothetical protein
LOC_Os05g06840Os.53549.1.S1_at1/115+3558632..3563241DNA polymerase epsilon subunit B family protein, expressed
LOC_Os05g06850OsAffx.22940.5.S1_at9/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.1.S1_s_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.5.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850Os.35344.3.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850Os.35344.18.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.2.S1_s_at1/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06860NANA5+3569686..3572913transposon protein, putative, unclassified
LOC_Os05g06870NANA5+3573555..3579710transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9920.1.S1_at--1105--831Chr05:3539901..3539925 (25 bp)
ATGGACTTGATAGCCTTTGAGACGT
LOC_Os05g06814
Os.9920.1.S1_at--1118--8151Chr05:3539845..3539869 (25 bp)
GGAACATGGCATTACCGATGGTTTC
LOC_Os05g06814
Os.9920.1.S1_at--221--8591Chr05:3539831..3539851 (21 bp)
TGGTTTCATCGTGGACTTGGTGTGC
LOC_Os05g06814
Os.9920.1.S1_at--335--7471Chr05:3539742..3539766 (25 bp)
GTGTGCGATGATTCCACTGCTGGGA
LOC_Os05g06814
Os.9920.1.S1_at--622--9851Chr05:3539682..3539706 (25 bp)
TACAATGGACTTCGTGACTTCACTC
LOC_Os05g06814
Os.9920.1.S1_at--655--7371Chr05:3539590..3539693 (25 bp)
GTGACTTCACTCTGCATACGTTTGA
LOC_Os05g06814
Os.9920.1.S1_at--306--991Chr05:3539566..3539590 (25 bp)
AGGAGTACCTTCTCAATCTTGGCTG
LOC_Os05g06814
Os.9920.1.S1_at--778--1311Chr05:3539384..3539408 (25 bp)
AGAGGTGTTACCTTCCCTCTGGGAT
LOC_Os05g06814
Os.9920.1.S1_at--876--991Chr05:3539261..3539368 (25 bp)
AGGATGTCCTTGTACTGCCATGAGA
LOC_Os05g06814
Os.9920.1.S1_at--414--4431Chr05:3539245..3539269 (25 bp)
GCCATGAGACAGCTGCGGCATAAAT
LOC_Os05g06814
Os.9920.1.S1_at--573--9811Chr05:3539203..3539227 (25 bp)
TAACTGTCGCTATGCCATATGCCTT
LOC_Os05g06814
Target Sequence 
ATGGACTTGATAGCCTTTGAGACGTTGGATATTACACNCCAGGAGGAGATTGAATCGGAACATGGCATTACCGATGGTTT
CATCGTGGACTTGGTGTGCGATGATTCCACTGCTGGGAGACTTGGTATTTCCAGGGGTGATGTCATTGTTTCATACAATG
GACTTCGTGACTTCACTCTGCATACGTTTGAGGAGTACCTTCTCAATCTTGGCTGGGGTTTTNTTGAGAGTACAGATCCG
AGCTGGACGATCAATTTAGAGCTTGAGATATATGATCCTGTTAGAGGTACTATCAGAGGTGTTACCTTCCCTCTGGGATT
TTNTGATATTTGCGAGGATGTCCTTGTACTGCCATGAGACAGCTGCGGCATAAATCGTCAAAGCAATGTGGCTAACTGTC
GCTATGCCATATGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis