Browse Element(s) Details


Os.53549.1.S1_at

Description gb:AK073230.1
DB_XREF= gi:32983253
TID=Os.53549.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033020F16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033020F16, full insert sequence.
FL= gb:AK073230.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g068401/11DNA polymerase epsilon subunit B family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06800OsAffx.14572.1.S1_at10/115+3537069..3538126hypothetical protein
LOC_Os05g06814OsAffx.26765.1.S1_s_at11/115+3539045..3549382expressed protein
LOC_Os05g06814Os.9920.1.S1_at11/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.14573.1.S1_at7/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.26765.1.S1_at3/115+3539045..3549382expressed protein
LOC_Os05g06830OsAffx.14574.1.S1_at10/115+3555866..3557448hypothetical protein
LOC_Os05g06830OsAffx.6962.1.S1_at1/115+3555866..3557448hypothetical protein
LOC_Os05g06840Os.53549.1.S1_at1/115+3558632..3563241DNA polymerase epsilon subunit B family protein, expressed
LOC_Os05g06850OsAffx.22940.5.S1_at9/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.1.S1_s_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.5.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850Os.35344.3.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850Os.35344.18.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.2.S1_s_at1/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06860NANA5+3569686..3572913transposon protein, putative, unclassified
LOC_Os05g06870NANA5+3573555..3579710transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.2.S1_s_at10/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.3.S1_x_at9/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.2.S1_at5/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.1.S1_s_at3/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.5.S1_x_at2/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.31552.2.S1_at1/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.31552.3.S1_x_at1/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06890Os.1150.1.S1_at11/115+3585521..3589390RelA-SpoT like protein RSH4, putative, expressed
LOC_Os05g06890Os.49922.1.S1_at1/115+3585521..3589390RelA-SpoT like protein RSH4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0008622cellular_componentepsilon DNA polymerase complex
GO:0003893molecular_functionepsilon DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53549.1.S1_at--715--1991Chr05:3562883..3563107 (25 bp)
ACTCCTCATACGATAGTACTGGGCG
LOC_Os05g06840
Os.53549.1.S1_at--485--2291Chr05:3563256..3563280 (25 bp)
AAATGAGGCTCACCAATTTGGCCAA
NONE
Os.53549.1.S1_at--204--10231Chr05:3563272..3563296 (25 bp)
TTTGGCCAATTTGGTAGCCTGTACC
NONE
Os.53549.1.S1_at--641--1671Chr05:3563287..3563311 (25 bp)
AGCCTGTACCATCCAAACTAGCATT
NONE
Os.53549.1.S1_at--1127--3051Chr05:3563317..3563341 (25 bp)
AATCTTCGATGAACTGCCTATCGCC
NONE
Os.53549.1.S1_at--944--531Chr05:3563336..3563360 (25 bp)
ATCGCCTTGGACATCAGCCTGATAT
NONE
Os.53549.1.S1_at--98--7731Chr05:3563385..3563409 (25 bp)
GGTGGAGGCCATTTTCATGCAAGCT
NONE
Os.53549.1.S1_at--884--6311Chr05:3563420..3563444 (25 bp)
GATGACATAACATGCATGACGCCAT
NONE
Os.53549.1.S1_at--158--7911Chr05:3563445..3563469 (25 bp)
GGTTGGTGTTTCTCTCAAGCAAACT
NONE
Os.53549.1.S1_at--920--8271Chr05:3563487..3563511 (25 bp)
GGCATCATGGTAGTGGTTTTCTTAT
NONE
Os.53549.1.S1_at--221--2331Chr05:3563621..3563645 (25 bp)
AAAGTGCTGCTTTCTTGTTCCTTCA
NONE
Target Sequence 
ACTCCTCATACGATAGTACTGGGCGACAAGAGCGACCAGAAGGCCTTCAAATACACAGGAATAACTTGCTTCAACCCTGG
TTCTTTTGCTAACGATAGCACCTTTGCAGCTTACCGTCCTTGCACTAAGGAGGTTGAGCTTTCTGCATTAGAAAGCTAAT
ATTAAAGAGATCAAAATGAGGCTCACCAATTTGGCCAATTTGGTAGCCTGTACCATCCAAACTAGCATTCTCCAAATCTT
CGATGAACTGCCTATCGCCTTGGACATCAGCCTGATATTTATGACTTGGACATACAAGTTAAGGTGGAGGCCATTTTCAT
GCAAGCTAATTCGAGGAGATGACATAACATGCATGACGCCATGGTTGGTGTTTCTCTCAAGCAAACTGATGCTGACATTT
AGATGGCATCATGGTAGTGGTTTTCTTATAACAAGGATTGAAATTATACTTAGCATAGCAGAATATTTGTGATGTATTTT
GCTTAAGCCATTCTACTTTGAAATATCTAGGCTTAAATTGTTGTAAACCAAGGTAACAAAAGTGCTGCTTTCTTGTTCCT
TCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis