Browse Element(s) Details


Os.1150.1.S1_at

Description gb:AB042936.1
DB_XREF= gi:12583662
GEN=Os-RelA2
TID=Os.1150.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1150 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Os-RelA2 mRNA for chloroplast RelA homologue 2, complete cds.
PROD=chloroplast RelA homologue 2
FL= gb:AK121808.1 gb:AB042936.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0689011/11RelA-SpoT like protein RSH4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06840Os.53549.1.S1_at1/115+3558632..3563241DNA polymerase epsilon subunit B family protein, expressed
LOC_Os05g06850OsAffx.22940.5.S1_at9/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.1.S1_s_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.5.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850Os.35344.3.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850Os.35344.18.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.2.S1_s_at1/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06860NANA5+3569686..3572913transposon protein, putative, unclassified
LOC_Os05g06870NANA5+3573555..3579710transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.2.S1_s_at10/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.3.S1_x_at9/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.2.S1_at5/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.1.S1_s_at3/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.5.S1_x_at2/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.31552.2.S1_at1/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.31552.3.S1_x_at1/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06890Os.1150.1.S1_at11/115+3585521..3589390RelA-SpoT like protein RSH4, putative, expressed
LOC_Os05g06890Os.49922.1.S1_at1/115+3585521..3589390RelA-SpoT like protein RSH4, putative, expressed
LOC_Os05g06900NANA5+3590168..3591748hypothetical protein
LOC_Os05g06910Os.17951.1.S1_at11/115+3592659..3597100expressed protein
LOC_Os05g06910OsAffx.30842.1.S1_at1/115+3592659..3597100expressed protein
LOC_Os05g06920Os.16903.1.A1_at11/115+3604413..3607112RelA/SpoT containing protein, expressed
LOC_Os05g06930NANA5+3609325..3609798hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1150.1.S1_at--711--5291Chr05:3588671..3588695 (25 bp)
GAAGGCTATCATGTTGGCTGCAGCA
LOC_Os05g06890
Os.1150.1.S1_at--982--1191Chr05:3588697..3588721 (25 bp)
AGTTAGCAGCTATGCGTCTTCGTGA
LOC_Os05g06890
Os.1150.1.S1_at--1107--7371Chr05:3588718..3588742 (25 bp)
GTGACCTCCCAGCTAGTGATCAAGG
LOC_Os05g06890
Os.1150.1.S1_at--1155--3991Chr05:3588762..3588786 (25 bp)
CGTGCTTTCTGCCAGCTTGATAAAA
LOC_Os05g06890
Os.1150.1.S1_at--186--5791Chr05:3588882..3588906 (25 bp)
GACGCAAACAGCGATGGCTCCTTGA
LOC_Os05g06890
Os.1150.1.S1_at--503--4791Chr05:3588898..3588922 (25 bp)
GCTCCTTGAGCTCCGATGAATTCGA
LOC_Os05g06890
Os.1150.1.S1_at--850--2151Chr05:3589114..3589138 (25 bp)
ACAGCGCGGGTCTCATTCAGGTCTA
LOC_Os05g06890
Os.1150.1.S1_at--198--5551Chr05:3589199..3589223 (25 bp)
GAAACTAATCCACCATCTTGCTATA
LOC_Os05g06890
Os.1150.1.S1_at--1058--911Chr05:3589225..3589249 (25 bp)
AGGCTATGGCTACTATCTGTCTGCA
LOC_Os05g06890
Os.1150.1.S1_at--965--3831Chr05:3589252..3589276 (25 bp)
CTGCATTCAGGGTACGCTCTTATTA
LOC_Os05g06890
Os.1150.1.S1_at--1151--6731Chr05:3589294..3589318 (25 bp)
GTTCATGGAGTTCTACGCAAGCCTG
LOC_Os05g06890
Target Sequence 
GAAGGCTATCATGTTGGCTGCAGCAGAGTTAGCAGCTATGCGTCTTCGTGACCTCCCAGCTAGTGATCAAGGAGACAGCA
ACTGCACGAACCGTGCTTTCTGCCAGCTTGATAAAAACGGTGATGGAAGGATCAGTATTGAGGAGCTCACAGAGGTGATG
GAAGACCTTGGTGCTGGGGGCAAAGATGCTAAGGAGCTCATGCATCTTCTCNGACGCAAACAGCGATGGCTCCTTGAGCT
CCGATGAATTCGAAGCATTCCAGAGACAGATCGAACTGATGAGAAGCTTGGACGACAAAGACGATCGCTACAGGAAGATA
CTGAAGGAGAAGCTGCAGACGATTGACAGCGCGGGTCTCATTCAGGTCTACCGCAAACAGCTGGGCGACAAACTGCTTGT
AAGCTAAAACTGAAGCTTAGCACAGGTGACGAAACTAATCCACCATCTTGCTATATAGGCTATGGCTACTATCTGTCTGC
ATACTGCATTCAGGGTACGCTCTTATTATCATTGATTATATATATGTTCATGGAGTTCTACGCAAGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis