Browse Element(s) Details


Os.16903.1.A1_at

Description gb:AK058438.1
DB_XREF= gi:32968456
TID=Os.16903.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.16903 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-F09, full insert sequence.
FL= gb:AK058438.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0692011/11RelA/SpoT containing protein, expressed
LOC_Os05g069401/11RelA/SpoT containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06870NANA5+3573555..3579710transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.2.S1_s_at10/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.3.S1_x_at9/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.2.S1_at5/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.1.S1_s_at3/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.5.S1_x_at2/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.31552.2.S1_at1/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.31552.3.S1_x_at1/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06890Os.1150.1.S1_at11/115+3585521..3589390RelA-SpoT like protein RSH4, putative, expressed
LOC_Os05g06890Os.49922.1.S1_at1/115+3585521..3589390RelA-SpoT like protein RSH4, putative, expressed
LOC_Os05g06900NANA5+3590168..3591748hypothetical protein
LOC_Os05g06910Os.17951.1.S1_at11/115+3592659..3597100expressed protein
LOC_Os05g06910OsAffx.30842.1.S1_at1/115+3592659..3597100expressed protein
LOC_Os05g06920Os.16903.1.A1_at11/115+3604413..3607112RelA/SpoT containing protein, expressed
LOC_Os05g06930NANA5+3609325..3609798hypothetical protein
LOC_Os05g06940Os.16903.1.A1_at1/115+3616342..3618246RelA/SpoT containing protein
LOC_Os05g06960OsAffx.14576.1.S1_at11/115+3621076..3621760hypothetical protein
LOC_Os05g06970Os.4844.1.S1_at11/115+3623889..3626088Peroxidase family protein, expressed
LOC_Os05g06980Os.27328.1.S1_at11/115+3630683..3641564expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16903.1.A1_at--83--4571Chr05:3606409..3606433 (25 bp)
GCGCCGGCAACATCGAGCGAGCATT
LOC_Os05g06920
Os.16903.1.A1_at--503--1851Chr05:3606547..3606571 (25 bp)
ACGACAATAACGACGGCTCGCTCAG
LOC_Os05g06920
Os.16903.1.A1_at--353--5411Chr05:3606791..3606815 (25 bp)
GAAGCTGCAGAAGGTCGACGACACG
LOC_Os05g06920
Os.16903.1.A1_at--404--5172Chr05:3606835..3606859 (25 bp)
GCAAGAACCTCAGCGACAAGCTCGT
LOC_Os05g06920
Os.16903.1.A1_at--654--7151Chr05:3606858..3606882 (25 bp)
GTCTCCGGCTGAACAAACGAGCTGC
LOC_Os05g06920
Os.16903.1.A1_at--964--4751Chr05:3606878..3606902 (25 bp)
GCTGCAAAATCGATCTGGTGATATT
LOC_Os05g06920
Os.16903.1.A1_at--653--231Chr05:3606898..3606922 (25 bp)
ATATTTGGTTGTGGTTTCGGCGTCA
LOC_Os05g06920
Os.16903.1.A1_at--210--7511Chr05:3606908..3606932 (25 bp)
GTGGTTTCGGCGTCAATTTGAAGAT
LOC_Os05g06920
Os.16903.1.A1_at--739--51Chr05:3606938..3606962 (25 bp)
ATTGCATGCAAATCCCAATCTGGGT
LOC_Os05g06920
Os.16903.1.A1_at--479--6291Chr05:3606964..3606988 (25 bp)
GATGTTGATGTTTTCGTCTTGTATG
LOC_Os05g06920
Os.16903.1.A1_at--1030--6751Chr05:3607000..3607024 (25 bp)
GTTAATGGAATCTGTAAGCCTGTAA
LOC_Os05g06920
Target Sequence 
GCGCCGGCAACATCGAGCGAGCATTCCGGTTGCTGGACAAGAACGGCGACGGGAGGATCAGCATGGAGGAGCTGACGGAG
CTCATGGAGGACCTCGGCGCCGGCGGCAAGGACGCCGAGGAGCTCATGCGCCTCCTCGACGACAATAACGACGGCTCGCT
CAGCTCCGACGAGTTCGCCCTCTTCCAAAAACGGGTTGAGCTGAAGGCGAAGTTGGAGGACAAGGATGATGAGTACAAGG
AGATCCTCANGCAGAAGCTGCAGAAGGTCGACGACACGGGGCTCATCCACGTCTACCGCAAGAACCTCAGCGACAAGCTC
GTCTCCGGCTGAACAAACGAGCTGCAAAATCGATCTGGTGATATTTGGTTGTGGTTTCGGCGTCAATTTGAAGATCATTG
ATTGCATGCAAATCCCAATCTGGGTTGATGTTGATGTTTTCGTCTTGTATGAATCAATTCATGTTAATGGAATCTGTAAG
CCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16903.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis