Browse Element(s) Details


Os.17951.1.S1_at

Description gb:AK105485.1
DB_XREF= gi:32990694
TID=Os.17951.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17951 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B06, full insert sequence.
FL= gb:AK105485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0691011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06850OsAffx.22940.5.S1_at9/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.1.S1_s_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.5.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850Os.35344.3.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850Os.35344.18.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.2.S1_s_at1/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06860NANA5+3569686..3572913transposon protein, putative, unclassified
LOC_Os05g06870NANA5+3573555..3579710transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.2.S1_s_at10/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.3.S1_x_at9/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.2.S1_at5/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.1.S1_s_at3/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.5.S1_x_at2/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.31552.2.S1_at1/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.31552.3.S1_x_at1/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06890Os.1150.1.S1_at11/115+3585521..3589390RelA-SpoT like protein RSH4, putative, expressed
LOC_Os05g06890Os.49922.1.S1_at1/115+3585521..3589390RelA-SpoT like protein RSH4, putative, expressed
LOC_Os05g06900NANA5+3590168..3591748hypothetical protein
LOC_Os05g06910Os.17951.1.S1_at11/115+3592659..3597100expressed protein
LOC_Os05g06910OsAffx.30842.1.S1_at1/115+3592659..3597100expressed protein
LOC_Os05g06920Os.16903.1.A1_at11/115+3604413..3607112RelA/SpoT containing protein, expressed
LOC_Os05g06930NANA5+3609325..3609798hypothetical protein
LOC_Os05g06940Os.16903.1.A1_at1/115+3616342..3618246RelA/SpoT containing protein
LOC_Os05g06960OsAffx.14576.1.S1_at11/115+3621076..3621760hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17951.1.S1_at--1006--911Chr05:3595418..3595442 (25 bp)
AGGCTAGGCATTTCTCAGGGAGACA
LOC_Os05g06910
Os.17951.1.S1_at--659--8051Chr05:3595436..3595460 (25 bp)
GGAGACATAATTCTTTCCTACAATG
LOC_Os05g06910
Os.17951.1.S1_at--777--8571Chr05:3595459..3595483 (25 bp)
TGGATTGCACGATTTCACTCTACAC
LOC_Os05g06910
Os.17951.1.S1_at--732--3731Chr05:3596078..3596102 (25 bp)
CTCTCTCTTGGCTGGGAATTACTTG
LOC_Os05g06910
Os.17951.1.S1_at--896--131Chr05:3596095..3596119 (25 bp)
ATTACTTGCAAGTGGCGATCCGAGT
LOC_Os05g06910
Os.17951.1.S1_at--389--7891Chr05:3596732..3596756 (25 bp)
GGTTCTTCCTCCGTGAGGTATTATG
LOC_Os05g06910
Os.17951.1.S1_at--437--4631Chr05:3596775..3596799 (25 bp)
GCGATGTGACCAACTGCTACTATGC
LOC_Os05g06910
Os.17951.1.S1_at--483--2551Chr05:3596786..3596810 (25 bp)
AACTGCTACTATGCCTGTGCTTGTT
LOC_Os05g06910
Os.17951.1.S1_at--61--8971Chr05:3596833..3596857 (25 bp)
TGAAATGTCAGCTAATGTCCTTTTG
LOC_Os05g06910
Os.17951.1.S1_at--1092--10051Chr05:3596870..3596894 (25 bp)
TAGTACTCTGGTAGGTCCGTGACTT
LOC_Os05g06910
Os.17951.1.S1_at--940--10431Chr05:3596961..3596985 (25 bp)
TTAGGTACTCTTCTTATCTAGTGGG
LOC_Os05g06910
Target Sequence 
AGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAGCTTGAAGAGTT
CCTTCTCTCTCTTGGCTGGGAATTACTTGCAAGTGGCGATCCGAGTTGGAATGTANGTTTAGAGCTTGTGGTATATGATG
CAGTTAGACATGCTACTAGATCTATTACCTATCCATTGGNAGTTTTCTGATGCTTNCTGAGCGGGTTCTTCCTCCGTGAG
GTATTATGGATAAAAGAGTCTGTCAAGCGATGTGACCAACTGCTACTATGCCTGTGCTTGTTTTTTTGGCTGTGGTAAGG
AATTTGAAATGTCAGCTAATGTCCTTTTGATTGACCATATCTAGTACTCTGGTAGGTCCGTGACTTCGTAAATTTTTTGG
TGAGATCTGTAAGGATATTGTGATGCAGCCTTTTCTTTGGCTGTGGTAGATATTAGGTACTCTTCTTATCTAGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis