Browse Element(s) Details


OsAffx.14576.1.S1_at

Description tigr:9633.m00619
TID=OsAffx.14576.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0696011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06910Os.17951.1.S1_at11/115+3592659..3597100expressed protein
LOC_Os05g06910OsAffx.30842.1.S1_at1/115+3592659..3597100expressed protein
LOC_Os05g06920Os.16903.1.A1_at11/115+3604413..3607112RelA/SpoT containing protein, expressed
LOC_Os05g06930NANA5+3609325..3609798hypothetical protein
LOC_Os05g06940Os.16903.1.A1_at1/115+3616342..3618246RelA/SpoT containing protein
LOC_Os05g06960OsAffx.14576.1.S1_at11/115+3621076..3621760hypothetical protein
LOC_Os05g06970Os.4844.1.S1_at11/115+3623889..3626088Peroxidase family protein, expressed
LOC_Os05g06980Os.27328.1.S1_at11/115+3630683..3641564expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14576.1.S1_at--546--5771Chr05:3621111..3621135 (25 bp)
GACGTTGGATGATCCATGCCTTGGA
LOC_Os05g06960
OsAffx.14576.1.S1_at--703--791Chr05:3621149..3621173 (25 bp)
ATGGGCGAAGTGATCACTGCCTCAC
LOC_Os05g06960
OsAffx.14576.1.S1_at--1069--4451Chr05:3621167..3621295 (25 bp)
GCCTCACTGGCCAAGAGGACGGTGT
LOC_Os05g06960
OsAffx.14576.1.S1_at--1145--6171Chr05:3621285..3621309 (25 bp)
GAGGACGGTGTGACCAATTCAGCAA
LOC_Os05g06960
OsAffx.14576.1.S1_at--713--6491Chr05:3621312..3621336 (25 bp)
GATAGATCGTCTTCAATGTGGAAAT
LOC_Os05g06960
OsAffx.14576.1.S1_at--118--851Chr05:3621345..3621366 (22 bp)
ATGGACGATCAGACGATGTGGACAC
LOC_Os05g06960
OsAffx.14576.1.S1_at--956--4051Chr05:3621358..3621669 (25 bp)
CGATGTGGACACGATCATGTTTGAT
LOC_Os05g06960
OsAffx.14576.1.S1_at--548--3511Chr05:3621660..3621684 (25 bp)
CATGTTTGATCAAAACTCTGTGCTA
LOC_Os05g06960
OsAffx.14576.1.S1_at--950--2411Chr05:3621671..3621695 (25 bp)
AAAACTCTGTGCTATGATGCTGGAA
LOC_Os05g06960
OsAffx.14576.1.S1_at--668--8151Chr05:3621692..3621716 (25 bp)
GGAAATCAGCACCTAATCACTGGCT
LOC_Os05g06960
OsAffx.14576.1.S1_at--571--3071Chr05:3621706..3621730 (25 bp)
AATCACTGGCTCAAGCCACATTCGG
LOC_Os05g06960
Target Sequence 
GACGTTGGATGATCCATGCCTTGGAAGAAGGTTGGCTGATGGGCGAAGTGATCACTGCCTCACTGGCCAAGAGGACGGTG
TGACCAATTCAGCAAATGATAGATCGTCTTCAATGTGGAAATGGGAGTGGATGGACGATCAGACGATGTGGACACGATCA
TGTTTGATCAAAACTCTGTGCTATGATGCTGGAAATCAGCACCTAATCACTGGCTCAAGCCACATTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis