Browse Element(s) Details


Os.27328.1.S1_at

Description gb:AK072427.1
DB_XREF= gi:32982450
TID=Os.27328.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27328 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106A22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089J15, full insert sequence.
FL= gb:AK072427.1 gb:AK099832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0698011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06920Os.16903.1.A1_at11/115+3604413..3607112RelA/SpoT containing protein, expressed
LOC_Os05g06930NANA5+3609325..3609798hypothetical protein
LOC_Os05g06940Os.16903.1.A1_at1/115+3616342..3618246RelA/SpoT containing protein
LOC_Os05g06960OsAffx.14576.1.S1_at11/115+3621076..3621760hypothetical protein
LOC_Os05g06970Os.4844.1.S1_at11/115+3623889..3626088Peroxidase family protein, expressed
LOC_Os05g06980Os.27328.1.S1_at11/115+3630683..3641564expressed protein
LOC_Os05g06990Os.15797.1.S1_at11/115+3649022..3651769protein kinase, putative, expressed
LOC_Os05g07000Os.50563.1.S1_at11/115+3652046..3656263RNA recognition motif family protein, expressed
LOC_Os05g07000Os.3748.1.S1_at1/115+3652046..3656263RNA recognition motif family protein, expressed
LOC_Os05g07010OsAffx.4266.1.S1_at11/115+3657667..3659300myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g07020OsAffx.14577.1.S1_at10/115+3659900..3663746hypothetical protein
LOC_Os05g07020Os.53408.1.A1_at1/115+3659900..3663746hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27328.1.S1_at--300--3071Chr05:3631186..3631210 (25 bp)
AATCAAAGCCACTACCTGAGGAGAG
LOC_Os05g06980
Os.27328.1.S1_at--924--8051Chr05:3631167..3631191 (25 bp)
GGAGAGATCTGAATTGAGCCCTTCA
LOC_Os05g06980
Os.27328.1.S1_at--599--9951Chr05:3631125..3631149 (25 bp)
TACGCCTAAGGCTGCACACGTCGAC
LOC_Os05g06980
Os.27328.1.S1_at--250--3531Chr05:3631086..3631110 (25 bp)
CATGAAGCCCGAGCAGCATCTGAAT
LOC_Os05g06980
Os.27328.1.S1_at--975--5251Chr05:3631065..3631089 (25 bp)
GAATCCTGACAATGAGCTCGCAAAC
LOC_Os05g06980
Os.27328.1.S1_at--78--1531Chr05:3631035..3631059 (25 bp)
AGCAGAACTTGGATCGGAGGACAGA
LOC_Os05g06980
Os.27328.1.S1_at--305--3271Chr05:3630869..3630893 (25 bp)
CAACTTCGTTCATTTGTATTGTCGA
LOC_Os05g06980
Os.27328.1.S1_at--181--9491Chr05:3630818..3630842 (25 bp)
TCTAAGTCTTTTAACCTTGGCAAGG
LOC_Os05g06980
Os.27328.1.S1_at--309--10731Chr05:3630790..3630814 (25 bp)
TTGCTATTTGTTTGTCTTGCCATGA
LOC_Os05g06980
Os.27328.1.S1_at--689--6671Chr05:3630762..3630786 (25 bp)
GTTGCATCATTACATGTACACTTGA
LOC_Os05g06980
Os.27328.1.S1_at--58--5611Chr05:3630695..3630719 (25 bp)
GACAATAAATGTTTTCACCGACGGT
LOC_Os05g06980
Target Sequence 
AATCAAAGCCACTACCTGAGGAGAGATCTGAATTGAGCCCTTCACCAATCCAGGCACCCGCTACGCCTAAGGCTGCACAC
GTCGACTCTCCAAAATCTCCCATGAAGCCCGAGCAGCATCTGAATCCTGACAATGAGCTCGCAAACCTGGGAGCAGAACT
TGGATCGGAGGACAGAGATTTTTCAGGTGAGGAGATTAACGGGTGGGAGTTCGATGAGCTCGAAGAGGACCTGAAAAACT
GACATAGCTGGGATCAAAGCAACAAAAATAGCAACATGTTCATGTACGCCCCCCAGTTCTGTTTGATGTACATATGACAA
CTTCGTTCATTTGTATTGTCGATATTTCAGGACATGCAGATTGAACTTTCTAAGTCTTTTAACCTTGGCAAGGCATTTGC
TATTTGTTTGTCTTGCCATGAGATGTTGCATCATTACATGTACACTTGAATACAGATTTTACTGAATACTGTTGTAACAT
TTGCAAAGACAGACAATAAATGTTTTCACCGACGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis