Browse Element(s) Details


Os.50563.1.S1_at

Description gb:AK063518.1
DB_XREF= gi:32973536
TID=Os.50563.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-H05, full insert sequence.
FL= gb:AK121854.1 gb:AK063518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0700011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06980Os.27328.1.S1_at11/115+3630683..3641564expressed protein
LOC_Os05g06990Os.15797.1.S1_at11/115+3649022..3651769protein kinase, putative, expressed
LOC_Os05g07000Os.50563.1.S1_at11/115+3652046..3656263RNA recognition motif family protein, expressed
LOC_Os05g07000Os.3748.1.S1_at1/115+3652046..3656263RNA recognition motif family protein, expressed
LOC_Os05g07010OsAffx.4266.1.S1_at11/115+3657667..3659300myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g07020OsAffx.14577.1.S1_at10/115+3659900..3663746hypothetical protein
LOC_Os05g07020Os.53408.1.A1_at1/115+3659900..3663746hypothetical protein
LOC_Os05g07030Os.6153.1.S1_at11/115+3667973..3675645arginyl-tRNA synthetase family protein, expressed
LOC_Os05g07040Os.51192.1.A1_a_at11/115+3675928..3680375PHD finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000245biological_processspliceosome assembly
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0016607cellular_componentnuclear speck
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50563.1.S1_at--668--7351Chr05:3652570..3652594 (25 bp)
GTGACAACGATTACCTGCCCAGTAA
LOC_Os05g07000
Os.50563.1.S1_at--59--5651Chr05:3652511..3652535 (25 bp)
GACAGCGATTACCTCTCCAGGGAGA
LOC_Os05g07000
Os.50563.1.S1_at--398--9311Chr05:3652415..3652439 (25 bp)
TCCCGCGACCGTTGATGACAAACAA
LOC_Os05g07000
Os.50563.1.S1_at--190--4431Chr05:3652389..3652413 (25 bp)
GCCATGGCCTTGAATCTGCAACAGT
LOC_Os05g07000
Os.50563.1.S1_at--323--10851Chr05:3652286..3652310 (25 bp)
TTGGCTGGCTAATTTTGACCGCACT
LOC_Os05g07000
Os.50563.1.S1_at--1084--5811Chr05:3652270..3652294 (25 bp)
GACCGCACTCTGTAGTATGTACACT
LOC_Os05g07000
Os.50563.1.S1_at--126--8751Chr05:3652253..3652277 (25 bp)
TGTACACTGTAGTACCTTCACCTTG
LOC_Os05g07000
Os.50563.1.S1_at--105--1791Chr05:3652223..3652247 (25 bp)
ACTCCGCAAACCTTTTATGACCTGA
LOC_Os05g07000
Os.50563.1.S1_at--261--3071Chr05:3652149..3652173 (25 bp)
AATCTTCCTTTGTATGCTTGTGCTA
LOC_Os05g07000
Os.50563.1.S1_at--712--10811Chr05:3652132..3652156 (25 bp)
TTGTGCTAAATCTTGGTTGGCTGTA
LOC_Os05g07000
Os.50563.1.S1_at--848--5571Chr05:3652059..3652083 (25 bp)
GAAAGTGCGCAATTCATCGGCAGAA
LOC_Os05g07000
Target Sequence 
GTGACAACGATTACCTGCCCAGTAAGAGAGATGATCAGAATGGGAGCTACAGGAGAGGTGACAGCGATTACCTCTCCAGG
GAGAGAGATGATTACCTGTCCAGGGGGAGAGATGATCAGAATGGGAGCCACAGGAGAGGTGACAGCGATTACCTGTCCCG
CGACCGTTGATGACAAACAATGCCATGGCCTTGAATCTGCAACAGTCTTTTTGGTGTTGTGACTCTTGGAACAAACTCTC
CTCCTGGATGGTGAATATGTTTGACTGTTGAGACATGAGATTTCTTGGCTGGCTAATTTTGACCGCACTCTGTAGTATGT
ACACTGTAGTACCTTCACCTTGCCTGCACTCCGCAAACCTTTTATGACCTGATATTGGTGTGGGATTAACGAGGATTTTA
TCAGTTAGTCGCTGTCAGCGAAATCTTCCTTTGTATGCTTGTGCTAAATCTTGGTTGGCTGTAATCATTAATGACGTGTT
ACATCAAAATGGACAGGTTTTTAAGAATTGAGAAAGTGCGCAATTCATCGGCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis