Browse Element(s) Details


Os.51192.1.A1_a_at

Description gb:AK071548.1
DB_XREF= gi:32981571
TID=Os.51192.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51192 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104P18, full insert sequence.
FL= gb:AK071548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0704011/11PHD finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06990Os.15797.1.S1_at11/115+3649022..3651769protein kinase, putative, expressed
LOC_Os05g07000Os.50563.1.S1_at11/115+3652046..3656263RNA recognition motif family protein, expressed
LOC_Os05g07000Os.3748.1.S1_at1/115+3652046..3656263RNA recognition motif family protein, expressed
LOC_Os05g07010OsAffx.4266.1.S1_at11/115+3657667..3659300myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g07020OsAffx.14577.1.S1_at10/115+3659900..3663746hypothetical protein
LOC_Os05g07020Os.53408.1.A1_at1/115+3659900..3663746hypothetical protein
LOC_Os05g07030Os.6153.1.S1_at11/115+3667973..3675645arginyl-tRNA synthetase family protein, expressed
LOC_Os05g07040Os.51192.1.A1_a_at11/115+3675928..3680375PHD finger protein, putative, expressed
LOC_Os05g07050Os.4209.1.S1_a_at3/115+3682241..3692532Pre-mRNA processing splicing factor 8, putative, expressed
LOC_Os05g07060Os.54555.1.S1_at10/115+3693797..3694910Fasciclin domain containing protein, expressed
LOC_Os05g07070Os.19023.1.S1_x_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.2.S1_x_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.1.S1_s_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.2.S1_s_at10/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07080OsAffx.4267.1.S1_at11/115+3704516..3707449D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51192.1.A1_a_at--365--11Chr05:3676568..3676592 (25 bp)
ATTTGCCAACTGTTTACGAAGTCGT
LOC_Os05g07040
Os.51192.1.A1_a_at--1123--1831Chr05:3676553..3676577 (25 bp)
ACGAAGTCGTATCTGGTTCAAGACA
LOC_Os05g07040
Os.51192.1.A1_a_at--889--10311Chr05:3676396..3676502 (25 bp)
TTTCATCGAAGCATACCAGCGACGT
LOC_Os05g07040
Os.51192.1.A1_a_at--571--1911Chr05:3676375..3676399 (25 bp)
ACGTGGCGCGTGTCGAAAATAATAT
LOC_Os05g07040
Os.51192.1.A1_a_at--514--6231Chr05:3676319..3676343 (25 bp)
GATGGCGACCACAGTGAGACCCTAT
LOC_Os05g07040
Os.51192.1.A1_a_at--632--1111Chr05:3676307..3676331 (25 bp)
AGTGAGACCCTATGCGGGACTTGCG
LOC_Os05g07040
Os.51192.1.A1_a_at--882--10711Chr05:3676287..3676311 (25 bp)
TTGCGGTGGGATATACAGCGCCGAC
LOC_Os05g07040
Os.51192.1.A1_a_at--784--5651Chr05:3676138..3676162 (25 bp)
GACAGTAGTAGCATATGCCACCCTC
LOC_Os05g07040
Os.51192.1.A1_a_at--1089--4431Chr05:3676081..3676105 (25 bp)
GCCATTGACAGAGGCGTCAGGCTGT
LOC_Os05g07040
Os.51192.1.A1_a_at--604--9631Chr05:3676065..3676089 (25 bp)
TCAGGCTGTGGGTTACTGTACCTTT
LOC_Os05g07040
Os.51192.1.A1_a_at--146--8311Chr05:3675956..3675980 (25 bp)
GGCTATGTATGTTGCCAGAGGAATA
LOC_Os05g07040
Target Sequence 
ATTTGCCAACTGTTTACGAAGTCGTATCTGGTTCAAGACAATCTAAGGAGAGGGACAGATCCGGCATGGACAACAGCAGC
AGAAATAAAATTTCATCGAAGCATACCAGCGACGTGGCGCGTGTCGAAAATAATATCAAGGAGGAAGATGAAGGCTACGA
CGAGGACGATGGCGACCACAGTGAGACCCTATGCGGGACTTGCGGTGGGATATACAGCGCCGACGAGTTCTGGATCGGCT
GCGACGTGTGCGAGAGGTGGTACCACGGCAAGTGCGTCAAGATCACTCCGGCGAAGGCGGAGAGCATAAAGCAGTACAAG
TGCCCGAGCTGCAGCTCCAAGAGNCCTAGACAGTAGTAGCATATGCCACCCTCCTCCGGCGAGAGGAGGTGTCGCCGGCG
ACGCCGCCATTGACAGAGGCGTCAGGCTGTGGGTTACTGTACCTTTCGTTTTTCGACTTACATATGATGAAGATGATGCC
AAATGTGAGGTAAGAAGATCACAAGACATTCATGTGAGGTGGAGATATGAGGCTATGTATGTTGCCAGAGGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51192.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis