Browse Element(s) Details


Os.19023.1.S1_s_at

Description gb:AK106311.1
DB_XREF= gi:32991520
TID=Os.19023.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-D04, full insert sequence.
FL= gb:AK106311.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0707011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07030Os.6153.1.S1_at11/115+3667973..3675645arginyl-tRNA synthetase family protein, expressed
LOC_Os05g07040Os.51192.1.A1_a_at11/115+3675928..3680375PHD finger protein, putative, expressed
LOC_Os05g07050Os.4209.1.S1_a_at3/115+3682241..3692532Pre-mRNA processing splicing factor 8, putative, expressed
LOC_Os05g07060Os.54555.1.S1_at10/115+3693797..3694910Fasciclin domain containing protein, expressed
LOC_Os05g07070Os.19023.1.S1_x_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.2.S1_x_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.1.S1_s_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.2.S1_s_at10/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07080OsAffx.4267.1.S1_at11/115+3704516..3707449D-mannose binding lectin family protein
LOC_Os05g07090Os.12993.1.S1_at11/115+3708656..3713258Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os05g07090Os.26897.1.S1_at3/115+3708656..3713258Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os05g07090OsAffx.29424.1.S1_at2/115+3708656..3713258Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os05g07100Os.40855.5.S1_x_at2/115+3723400..3724467hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19023.1.S1_s_at--636--7591Chr05:3700343..3700367 (25 bp)
GGGCTTGTTCCACTGTTATACTATG
LOC_Os05g07070
Os.19023.1.S1_s_at--623--8291Chr05:3700342..3700366 (25 bp)
GGCTTGTTCCACTGTTATACTATGA
LOC_Os05g07070
Os.19023.1.S1_s_at--107--4931Chr05:3700341..3700365 (25 bp)
GCTTGTTCCACTGTTATACTATGAC
LOC_Os05g07070
Os.19023.1.S1_s_at--46--8811Chr05:3700338..3700362 (25 bp)
TGTTCCACTGTTATACTATGACCAT
LOC_Os05g07070
Os.19023.1.S1_s_at--1128--2131Chr05:3700209..3700233 (25 bp)
ACAGATATCTCTCCCACATGTCATA
LOC_Os05g07070
Os.19023.1.S1_s_at--411--1271Chr05:3700207..3700231 (25 bp)
AGATATCTCTCCCACATGTCATAGC
LOC_Os05g07070
Os.19023.1.S1_s_at--470--6511Chr05:3700206..3700230 (25 bp)
GATATCTCTCCCACATGTCATAGCT
LOC_Os05g07070
Os.19023.1.S1_s_at--461--251Chr05:3700205..3700229 (25 bp)
ATATCTCTCCCACATGTCATAGCTC
LOC_Os05g07070
Os.19023.1.S1_s_at--173--3771Chr05:3700201..3700225 (25 bp)
CTCTCCCACATGTCATAGCTCAATA
LOC_Os05g07070
Os.19023.1.S1_s_at--338--9511Chr05:3700200..3700224 (25 bp)
TCTCCCACATGTCATAGCTCAATAT
LOC_Os05g07070
Os.19023.1.S1_s_at--166--9331Chr05:3700198..3700222 (25 bp)
TCCCACATGTCATAGCTCAATATGA
LOC_Os05g07070
Target Sequence 
GGGCTTGTTCCACTGTTATACTATGACCATCCGCCTTGATGGTTTTGCCTGGCTATTCTGAAGCTATTAGTTAGCGTTAC
ACCTTTTAAGTTTTACACATCCAGTGTTGTTCTTTTGTTTTTCTAATATTATGTACAGATATCTCTCCCACATGTCATAG
CTCAATATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19023.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis