Browse Element(s) Details


Os.12993.1.S1_at

Description gb:AK071561.1
DB_XREF= gi:32981584
TID=Os.12993.1
CNT=28
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.12993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099O18, full insert sequence.
FL= gb:AK071561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0709011/11Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07050Os.4209.1.S1_a_at3/115+3682241..3692532Pre-mRNA processing splicing factor 8, putative, expressed
LOC_Os05g07060Os.54555.1.S1_at10/115+3693797..3694910Fasciclin domain containing protein, expressed
LOC_Os05g07070Os.19023.1.S1_x_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.2.S1_x_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.1.S1_s_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.2.S1_s_at10/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07080OsAffx.4267.1.S1_at11/115+3704516..3707449D-mannose binding lectin family protein
LOC_Os05g07090Os.12993.1.S1_at11/115+3708656..3713258Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os05g07090Os.26897.1.S1_at3/115+3708656..3713258Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os05g07090OsAffx.29424.1.S1_at2/115+3708656..3713258Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os05g07100Os.40855.5.S1_x_at2/115+3723400..3724467hypothetical protein
LOC_Os05g07109NANA5+3730076..3732121NA
LOC_Os05g07120Os.56950.1.S1_at11/115+3734495..3737806Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006552biological_processleucine catabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0046459biological_processshort-chain fatty acid metabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0005777cellular_componentperoxisome
GO:0003997molecular_functionacyl-CoA oxidase activity
GO:0008470molecular_functionisovaleryl-CoA dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12993.1.S1_at--240--7691Chr05:3710038..3710061 (24 bp)
GGGTCTTCGACATGTGTCATCGGTA
LOC_Os05g07090
Os.12993.1.S1_at--163--3191Chr05:3709908..3709932 (25 bp)
CAATTTGGAGTTCCGTTGGCAGCTT
LOC_Os05g07090
Os.12993.1.S1_at--935--10832Chr04:16628192..16628290 (24 bp)
TTGGCAGCTTTTCAGCTCAACCAAG
NONE
Os.12993.1.S1_at--166--5531Chr05:3709869..3709893 (25 bp)
GAAAAGCTTGTTCGCATGCTAGGAA
LOC_Os05g07090
Os.12993.1.S1_at--624--8471Chr05:3709818..3709842 (25 bp)
TGGCGCCTGTGCAAGCTGTATGAAT
LOC_Os05g07090
Os.12993.1.S1_at--1123--7491Chr05:3709607..3709631 (25 bp)
GTGGTTTCTCTTGGCCGTGAGCTAC
LOC_Os05g07090
Os.12993.1.S1_at--84--11Chr05:3709572..3709596 (25 bp)
CGGAATTTTGGCTGACTTTCTGGTA
LOC_Os05g07090
Os.12993.1.S1_at--556--10011Chr05:3708923..3709387 (25 bp)
TAGCAAAGGCGTTCTGTGATCTGGA
LOC_Os05g07090
Os.12993.1.S1_at--1077--7391Chr05:3708908..3708932 (25 bp)
GTGATCTGGAGCCAATCTTCTCGTA
LOC_Os05g07090
Os.12993.1.S1_at--622--5671Chr05:3708870..3708894 (25 bp)
GACATCAACAGCTTGGTGACCGGAA
LOC_Os05g07090
Os.12993.1.S1_at--420--6451Chr05:3708841..3708865 (25 bp)
GATCACCGGAATCGCCAGCTTCAAA
LOC_Os05g07090
Target Sequence 
GGGTCTTCGACATGTGTCATCGGTATTTGAAAGAAAGAAAGCAATTTGGAGTTCCGTTGGCAGCTTTTCAGCTCAACCAA
GAAAAGCTTGTTCGCATGCTAGGAAACATCCAAGCCATGCTTCTTGTCGGCTGGCGCCTGTGCAAGCTGTATGAATCAGG
CAAAATGACACCAGGCCATGCTAGTTTAGGCAAGGCATGGACATCCAAGAAGGCTAGGGAGGTGGTTTCTCTTGGCCGTG
AGCTACTGGGTGGAAACGGAATTTTGGCTGACTTTCTGGTAGCAAAGGCGTTCTGTGATCTGGAGCCAATCTTCTCGTAC
GAAGGCACCTATGACATCAACAGCTTGGTGACCGGAAGAGAGATCACCGGAATCGCCAGCTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis