Browse Element(s) Details


OsAffx.4266.1.S1_at

Description tigr:9633.m00624
TID=OsAffx.4266.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MYB-related protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0701011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06980Os.27328.1.S1_at11/115+3630683..3641564expressed protein
LOC_Os05g06990Os.15797.1.S1_at11/115+3649022..3651769protein kinase, putative, expressed
LOC_Os05g07000Os.50563.1.S1_at11/115+3652046..3656263RNA recognition motif family protein, expressed
LOC_Os05g07000Os.3748.1.S1_at1/115+3652046..3656263RNA recognition motif family protein, expressed
LOC_Os05g07010OsAffx.4266.1.S1_at11/115+3657667..3659300myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g07020OsAffx.14577.1.S1_at10/115+3659900..3663746hypothetical protein
LOC_Os05g07020Os.53408.1.A1_at1/115+3659900..3663746hypothetical protein
LOC_Os05g07030Os.6153.1.S1_at11/115+3667973..3675645arginyl-tRNA synthetase family protein, expressed
LOC_Os05g07040Os.51192.1.A1_a_at11/115+3675928..3680375PHD finger protein, putative, expressed
LOC_Os05g07050Os.4209.1.S1_a_at3/115+3682241..3692532Pre-mRNA processing splicing factor 8, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4266.1.S1_at--955--2771Chr05:3658986..3659010 (25 bp)
AAGAGGATCGAAGCGTTCGTCGCCA
LOC_Os05g07010
OsAffx.4266.1.S1_at--1074--5371Chr05:3658786..3658810 (25 bp)
GAAGCATTTTCTGAAGGCCCGCAAG
LOC_Os05g07010
OsAffx.4266.1.S1_at--180--4491Chr05:3658585..3658609 (25 bp)
GCCGGCGTGCTACTCAACTGATGAA
LOC_Os05g07010
OsAffx.4266.1.S1_at--965--651Chr05:3658565..3658589 (25 bp)
ATGAAGCTTCTTTCCGGCCATTGAT
LOC_Os05g07010
OsAffx.4266.1.S1_at--734--5731Chr05:3658441..3658465 (25 bp)
GACTGTTCATTCATCGAGACACCAA
LOC_Os05g07010
OsAffx.4266.1.S1_at--234--5991Chr05:3658426..3658450 (25 bp)
GAGACACCAAGCTGCATCGGATCAG
LOC_Os05g07010
OsAffx.4266.1.S1_at--983--6291Chr05:3658381..3658405 (25 bp)
GATGATGCCTTCTTCATGCAGGATG
LOC_Os05g07010
OsAffx.4266.1.S1_at--1147--7971Chr05:3658361..3658385 (25 bp)
GGATGAAACAATTCGGCTCCCAATT
LOC_Os05g07010
OsAffx.4266.1.S1_at--970--10631Chr05:3658187..3658211 (25 bp)
TTCGCTCAGGTGTACAAGTTCGTCG
LOC_Os05g07010
OsAffx.4266.1.S1_at--299--2831Chr05:3658172..3658196 (25 bp)
AAGTTCGTCGGCGACATGTTCGGCT
LOC_Os05g07010
OsAffx.4266.1.S1_at--1140--451Chr05:3657983..3658112 (25 bp)
ATCTCGGAGACGATCTTGCTGGTGC
LOC_Os05g07010
Target Sequence 
AAGAGGATCGAAGCGTTCGTCGCCACCAAGACGGCCATCCAGATTCGCAGCCATGCCCAGAAGCATTTTCTGAAGGCCCG
CAAGTTCGGCCTCGCCGGTGGGCTCCCGCCGCCGCTTCACCCTCGCCGTGCCACGCTGCTCCGGGCCAACGCCGCGGCGG
CGGACATGATGCCGCCCCCGTGGCTGCCATCGGCCGGCGGCGGCTCCATCGGTTGCTCGGCGCCACCGTCCGGCGTGCAG
CAGAGCATGGCCGGCAGGTCGCCGGCGTGCTACTCAACTGATGAAGCTTCTTTCCGGCCATTGATTCATAGCAATGACAA
TGACTGTTCATTCATCGAGACACCAAGCTGCATCGGATCAGGTGGCGAATCATGGATCGGTGATGATGCCTTCTTCATGC
AGGATGAAACAATTCGGCTCCCAATTTCTCCAGATGACCTGGGATTCGCTCAGGTGTACAAGTTCGTCGGCGACATGTTC
GGCTCCGGCGAGCGGCGGCCGGTGGAGGCTCACCTGCGGAGGCTGCAGGGCATGGACCCTGCCATCTCGGAGACGATCTT
GCTGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis