Browse Element(s) Details


Os.4844.1.S1_at

Description gb:AK067416.1
DB_XREF= gi:32977434
TID=Os.4844.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102I07, full insert sequence.
FL= gb:AK067416.1 gb:AK102154.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0697011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06920Os.16903.1.A1_at11/115+3604413..3607112RelA/SpoT containing protein, expressed
LOC_Os05g06930NANA5+3609325..3609798hypothetical protein
LOC_Os05g06940Os.16903.1.A1_at1/115+3616342..3618246RelA/SpoT containing protein
LOC_Os05g06960OsAffx.14576.1.S1_at11/115+3621076..3621760hypothetical protein
LOC_Os05g06970Os.4844.1.S1_at11/115+3623889..3626088Peroxidase family protein, expressed
LOC_Os05g06980Os.27328.1.S1_at11/115+3630683..3641564expressed protein
LOC_Os05g06990Os.15797.1.S1_at11/115+3649022..3651769protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4844.1.S1_at--32--7371Chr05:3624407..3624431 (25 bp)
GTGAACTCCTTCGTGCGCAGCGAGG
LOC_Os05g06970
Os.4844.1.S1_at--152--1631Chr05:3624389..3624413 (25 bp)
AGCGAGGCGACGTTCCGGCTCAAGT
LOC_Os05g06970
Os.4844.1.S1_at--963--6651Chr05:3624366..3624390 (25 bp)
GTTCGCCAGGGCCATGATCAAGATG
LOC_Os05g06970
Os.4844.1.S1_at--254--7091Chr05:3624284..3624308 (25 bp)
GTCAACCCTGTCAATGTCACTGCTA
LOC_Os05g06970
Os.4844.1.S1_at--1027--2551Chr05:3624185..3624209 (25 bp)
AACTGATTACCACTGCTTGTTAGTA
LOC_Os05g06970
Os.4844.1.S1_at--702--6011Chr05:3624066..3624090 (25 bp)
GAGAGACATCAGATCTTGTTTACCT
LOC_Os05g06970
Os.4844.1.S1_at--669--7911Chr05:3624026..3624050 (25 bp)
GGTTGATACTGTCACCATCTTGTGC
LOC_Os05g06970
Os.4844.1.S1_at--765--1731Chr05:3624013..3624037 (25 bp)
ACCATCTTGTGCTTGTCAGTCTGAA
LOC_Os05g06970
Os.4844.1.S1_at--621--2251Chr05:3623988..3624012 (25 bp)
AAATAAATTGTTGCATCCAGCATGC
LOC_Os05g06970
Os.4844.1.S1_at--70--6751Chr05:3623934..3623958 (25 bp)
GTTCATATTGTTAACCTTGCACATA
LOC_Os05g06970
Os.4844.1.S1_at--223--8311Chr05:3623891..3623915 (25 bp)
GGCTATTGATCAGCATTTACTCATA
LOC_Os05g06970
Target Sequence 
GTGAACTCCTTCGTGCGCAGCGAGGCGACGTTCCGGCTCAAGTTCGCCAGGGCCATGATCAAGATGGGGCAGATCGGCGT
GCTGTCCGGGACGCAGGGCGAGATCAGGCTCAACTGCAGGGTCGTCAACCCTGTCAATGTCACTGCTACTGCAGCTGATG
ATCACCACCTTACTTCCTCTTCCTCCTCTTCTTCAGATGAAGTGGCTGCAAGCTAATTAATTAACTGATTACCACTGCTT
GTTAGTAGGTGTGCATGCACAGACAGTGATTGAGATGTGTGTGAAGTTCAGTGTGATGAGATGATTAGATGCTTCAATTG
TTTGTTGCAGTTACAGTGATTGAGAGACATCAGATCTTGTTTACCTGATGTAGGTGTTGGTGGTTGATACTGTCACCATC
TTGTGCTTGTCAGTCTGAAAAATAAATTGTTGCATCCAGCATGCACTGGTGTCANANNNNNNNNNNNNNNNCTGTTCATA
TTGTTAACCTTGCACATAAGATTGGCAAATAAAAATGGCTATTGATCAGCATTTACTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis