Browse Element(s) Details


OsAffx.6962.1.S1_at

Description tigr:9639.m00096
TID=OsAffx.6962.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g068301/11hypothetical protein
LOC_Os04g179601/11retrotransposon protein, putative, unclassified
LOC_Os07g280501/11O-methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06800OsAffx.14572.1.S1_at10/115+3537069..3538126hypothetical protein
LOC_Os05g06814OsAffx.26765.1.S1_s_at11/115+3539045..3549382expressed protein
LOC_Os05g06814Os.9920.1.S1_at11/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.14573.1.S1_at7/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.26765.1.S1_at3/115+3539045..3549382expressed protein
LOC_Os05g06830OsAffx.14574.1.S1_at10/115+3555866..3557448hypothetical protein
LOC_Os05g06830OsAffx.6962.1.S1_at1/115+3555866..3557448hypothetical protein
LOC_Os05g06840Os.53549.1.S1_at1/115+3558632..3563241DNA polymerase epsilon subunit B family protein, expressed
LOC_Os05g06850OsAffx.22940.5.S1_at9/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.1.S1_s_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.5.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850Os.35344.3.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850Os.35344.18.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.2.S1_s_at1/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06860NANA5+3569686..3572913transposon protein, putative, unclassified
LOC_Os05g06870NANA5+3573555..3579710transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.2.S1_s_at10/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.3.S1_x_at9/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.2.S1_at5/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.1.S1_s_at3/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.5.S1_x_at2/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.31552.2.S1_at1/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.31552.3.S1_x_at1/115+3580249..3581707transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6962.1.S1_at--600--76960Chr12:18562796..18563290 (25 bp)
GGGTAGATACTAGTCCTTGTGCATA
NONE
OsAffx.6962.1.S1_at--40--1151NONE
AGTCCTTGTGCATACTATCATTACA
NONE
OsAffx.6962.1.S1_at--632--2912Chr08:3828342..3828361 (20 bp)
AAGGATATGCCTCGACTGGGTGACC
NONE
OsAffx.6962.1.S1_at--889--5731Chr11:506816..506840 (25 bp)
GACTGGGTGACCTGGATGCAGATCT
NONE
OsAffx.6962.1.S1_at--653--5031Chr11:506799..506823 (25 bp)
GCAGATCTGGTACTGAGAGTTCTTT
NONE
OsAffx.6962.1.S1_at--100--751Chr11:506762..506786 (25 bp)
ATGTATTTTGCATCCACTATCTTGG
NONE
OsAffx.6962.1.S1_at--815--9211Chr11:506750..506774 (25 bp)
TCCACTATCTTGGTCCCAACAAGTT
NONE
OsAffx.6962.1.S1_at--399--1231Chr11:506729..506753 (25 bp)
AGTTCTCCCTATGTTTATTCTCAGA
NONE
OsAffx.6962.1.S1_at--197--10451Chr11:506691..506715 (25 bp)
TTAGGAGGCAGCATTTTGATGACAT
NONE
OsAffx.6962.1.S1_at--571--5451Chr11:506665..506689 (25 bp)
GAACGCGATGTTTTTAGTCCTAGAC
NONE
OsAffx.6962.1.S1_at--525--9253Chr12:565554..565578 (25 bp)
TCCTAGACAAGATTGACTCGCCCAA
NONE
Target Sequence 
GGGTAGATACTAGTCCTTGTGCATACTATCATTACAAGGATATGCCTCGACTGGGTGACCTGGATGCAGATCTGGTACTG
AGAGTTCTTTGTGAGATTGCATATGTATTTTGCATCCACTATCTTGGTCCCAACAAGTTCTCCCTATGTTTATTCTCAGA
CTGGCATGATTTATTAGGAGGCAGCATTTTGATGACATGGAACGCGATGTTTTTAGTCCTAGACAAGATTGACTCGCCCA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis