Browse Element(s) Details


OsAffx.14574.1.S1_at

Description tigr:9633.m00608
TID=OsAffx.14574.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0683010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06800OsAffx.14572.1.S1_at10/115+3537069..3538126hypothetical protein
LOC_Os05g06814OsAffx.26765.1.S1_s_at11/115+3539045..3549382expressed protein
LOC_Os05g06814Os.9920.1.S1_at11/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.14573.1.S1_at7/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.26765.1.S1_at3/115+3539045..3549382expressed protein
LOC_Os05g06830OsAffx.14574.1.S1_at10/115+3555866..3557448hypothetical protein
LOC_Os05g06830OsAffx.6962.1.S1_at1/115+3555866..3557448hypothetical protein
LOC_Os05g06840Os.53549.1.S1_at1/115+3558632..3563241DNA polymerase epsilon subunit B family protein, expressed
LOC_Os05g06850OsAffx.22940.5.S1_at9/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.1.S1_s_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.5.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850Os.35344.3.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850Os.35344.18.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.2.S1_s_at1/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06860NANA5+3569686..3572913transposon protein, putative, unclassified
LOC_Os05g06870NANA5+3573555..3579710transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.2.S1_s_at10/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.3.S1_x_at9/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.2.S1_at5/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.1.S1_s_at3/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.22940.5.S1_x_at2/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.31552.2.S1_at1/115+3580249..3581707transposon protein, putative, unclassified
LOC_Os05g06880OsAffx.31552.3.S1_x_at1/115+3580249..3581707transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14574.1.S1_at--342--1111Chr05:3557394..3557418 (25 bp)
AGTGAGGCTCGGTCGGAGGAGGCTG
LOC_Os05g06830
OsAffx.14574.1.S1_at--34--3391NONE
CAGCGACGGGCAGAGCACTAGGTAC
NONE
OsAffx.14574.1.S1_at--530--8251Chr05:3555952..3555976 (25 bp)
GGCAGAGCACTAGGTACAACGTTGA
LOC_Os05g06830
OsAffx.14574.1.S1_at--209--5111Chr05:3555946..3555970 (25 bp)
GCACTAGGTACAACGTTGACTCCTT
LOC_Os05g06830
OsAffx.14574.1.S1_at--545--7831Chr05:3555940..3555964 (25 bp)
GGTACAACGTTGACTCCTTCTAGAT
LOC_Os05g06830
OsAffx.14574.1.S1_at--1049--2191Chr05:3555937..3555961 (25 bp)
ACAACGTTGACTCCTTCTAGATGTT
LOC_Os05g06830
OsAffx.14574.1.S1_at--977--4031Chr05:3555933..3555957 (25 bp)
CGTTGACTCCTTCTAGATGTTGTGT
LOC_Os05g06830
OsAffx.14574.1.S1_at--921--5711Chr05:3555929..3555953 (25 bp)
GACTCCTTCTAGATGTTGTGTCAGT
LOC_Os05g06830
OsAffx.14574.1.S1_at--329--9251Chr05:3555926..3555950 (25 bp)
TCCTTCTAGATGTTGTGTCAGTGAG
LOC_Os05g06830
OsAffx.14574.1.S1_at--890--8711Chr05:3555911..3555935 (25 bp)
TGTCAGTGAGGGTAAGGCCGCAATC
LOC_Os05g06830
OsAffx.14574.1.S1_at--956--1051Chr05:3555903..3555927 (25 bp)
AGGGTAAGGCCGCAATCATCGTCAA
LOC_Os05g06830
Target Sequence 
AGTGAGGCTCGGTCGGAGGAGGCTGGAGCAGCAGCGACGGGCAGAGCACTAGGTACAACGTTGACTCCTTCTAGATGTTG
TGTCAGTGAGGGTAAGGCCGCAATCATCGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis