Browse Element(s) Details


OsAffx.26765.1.S1_s_at

Description tigr:9633.m00602
TID=OsAffx.26765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0681411/11expressed protein
LOC_Os05g0679011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06770Os.37856.1.S1_at11/115+3513361..3514176ubiquitin, putative, expressed
LOC_Os05g06780Os.12266.1.S1_at11/115+3517583..3518969protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os05g06790OsAffx.26765.1.S1_s_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06790OsAffx.26765.1.S1_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06800OsAffx.14572.1.S1_at10/115+3537069..3538126hypothetical protein
LOC_Os05g06814OsAffx.26765.1.S1_s_at11/115+3539045..3549382expressed protein
LOC_Os05g06814Os.9920.1.S1_at11/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.14573.1.S1_at7/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.26765.1.S1_at3/115+3539045..3549382expressed protein
LOC_Os05g06830OsAffx.14574.1.S1_at10/115+3555866..3557448hypothetical protein
LOC_Os05g06830OsAffx.6962.1.S1_at1/115+3555866..3557448hypothetical protein
LOC_Os05g06840Os.53549.1.S1_at1/115+3558632..3563241DNA polymerase epsilon subunit B family protein, expressed
LOC_Os05g06850OsAffx.22940.5.S1_at9/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.1.S1_s_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.5.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850Os.35344.3.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850Os.35344.18.S1_x_at8/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06850OsAffx.22940.2.S1_s_at1/115+3565093..3568009calcineurin-like phosphoesterase family protein, putative
LOC_Os05g06860NANA5+3569686..3572913transposon protein, putative, unclassified
LOC_Os05g06870NANA5+3573555..3579710transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26765.1.S1_s_at--900--4252Chr05:3526277..3526301 (25 bp)
CCGGCGATCCCATGGATTTTCTCAA
LOC_Os05g06790
OsAffx.26765.1.S1_s_at--210--6072Chr05:3526312..3526336 (25 bp)
GAGTTCAGGAGGATCTGCGCTCTTC
LOC_Os05g06790
OsAffx.26765.1.S1_s_at--554--10672Chr05:3526443..3526464 (22 bp)
TTCCAGAACCTGCAGGTACTGTCAT
LOC_Os05g06790
OsAffx.26765.1.S1_s_at--249--8712Chr05:3526474..3526498 (25 bp)
TGTCAGGAGGAAGCCTACGGGCCCT
LOC_Os05g06790
OsAffx.26765.1.S1_s_at--841--9352Chr05:3526521..3526545 (25 bp)
TCGCAAGCGTAGCAGACAATAGCAT
LOC_Os05g06790
OsAffx.26765.1.S1_s_at--1162--9992Chr05:3526540..3526564 (25 bp)
TAGCATGATCCGGAAGGCTTCTCGT
LOC_Os05g06790
OsAffx.26765.1.S1_s_at--70--8292Chr05:3526574..3526595 (22 bp)
GGCATTTCCTCCAGGATACCTGATG
LOC_Os05g06790
OsAffx.26765.1.S1_s_at--509--5192Chr05:3526780..3526804 (25 bp)
GCAATGCAGTGGTATCGTGGTCGAT
LOC_Os05g06790
OsAffx.26765.1.S1_s_at--616--9812Chr05:3526836..3526860 (25 bp)
TAACTTGCTCTGCAGCCGTGTGCTT
LOC_Os05g06790
OsAffx.26765.1.S1_s_at--1094--3372Chr05:3526848..3526872 (25 bp)
CAGCCGTGTGCTTTGATGGTGCACT
LOC_Os05g06790
OsAffx.26765.1.S1_s_at--412--10772Chr05:3526860..3526884 (25 bp)
TTGATGGTGCACTAGTCCATCCCAA
LOC_Os05g06790
Target Sequence 
CCGGCGATCCCATGGATTTTCTCAAGTGGGATAAAGAGTTCAGGAGGATCTGCGCTCTTCCAGAACCTGCAGGTACTGTC
ATCCCTTGCACTGTCAGGAGGAAGCCTACGGGCCCTCGCACCGTCAGCGTCACGGACATCGCAAGCGTAGCAGACAATAG
CATGATCCGGAAGGCTTCTCGTTCCGTCGTCGGCATTTCCTCCAGGATACCTGATGGGAAGGAGATTATGCAATGCAGTG
GTATCGTGGTCGATTGGAACAAGACCAGCAGGTTGGCGACAATCGTAACTTGCTCTGCAGCCGTGTGCTTTGATGGTGCA
CTAGTCCATCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26765.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis