Browse Element(s) Details


Os.12266.1.S1_at

Description gb:BE040818
DB_XREF= gi:8336284
DB_XREF=OF12B05
TID=Os.12266.1
CNT=23
FEA=EST
TIER=Stack
STK=8
UG=Os.12266 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568160.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0678011/11protease inhibitor/seed storage/lipid transfer protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06740OsAffx.26763.1.S1_at11/115+3493623..3496463hypothetical protein
LOC_Os05g06750OsAffx.26764.1.S1_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06750OsAffx.26764.1.S1_x_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06750Os.8443.1.S1_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06760Os.6307.1.S1_at11/115+3509490..3512896macrophage erythroblast attacher, putative, expressed
LOC_Os05g06770Os.37856.1.S1_at11/115+3513361..3514176ubiquitin, putative, expressed
LOC_Os05g06780Os.12266.1.S1_at11/115+3517583..3518969protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os05g06790OsAffx.26765.1.S1_s_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06790OsAffx.26765.1.S1_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06800OsAffx.14572.1.S1_at10/115+3537069..3538126hypothetical protein
LOC_Os05g06814OsAffx.26765.1.S1_s_at11/115+3539045..3549382expressed protein
LOC_Os05g06814Os.9920.1.S1_at11/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.14573.1.S1_at7/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.26765.1.S1_at3/115+3539045..3549382expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12266.1.S1_at--544--3711Chr05:3518874..3518898 (25 bp)
CTAGTTGACACAATGAGGGCGGGCA
LOC_Os05g06780
Os.12266.1.S1_at--1073--8851Chr05:3518633..3518657 (25 bp)
TGATGCTGTCCAACACGGCCAGGGT
LOC_Os05g06780
Os.12266.1.S1_at--1124--9131Chr05:3517856..3517875 (20 bp)
TGCGGAGATTACACGCTGCCTTGAC
LOC_Os05g06780
Os.12266.1.S1_at--502--9151Chr05:3517840..3517864 (25 bp)
TGCCTTGACCCTTGAGGCCTTGAGG
LOC_Os05g06780
Os.12266.1.S1_at--945--8111Chr05:3517814..3517838 (25 bp)
GGACTGTGGCACTTATCGATATCAA
LOC_Os05g06780
Os.12266.1.S1_at--325--251Chr05:3517796..3517820 (25 bp)
ATATCAAGACGTACGGATGCCGTGG
LOC_Os05g06780
Os.12266.1.S1_at--672--8051Chr05:3517772..3517796 (25 bp)
GGAGCTTAGGCTTTGTGTCGGAATA
LOC_Os05g06780
Os.12266.1.S1_at--35--9791Chr05:3517749..3517773 (25 bp)
TAAGCGAGAGTCCTTCATGTTCGGG
LOC_Os05g06780
Os.12266.1.S1_at--227--7591Chr05:3517726..3517750 (25 bp)
GGGCTCTGCCACTTATATGGACTAT
LOC_Os05g06780
Os.12266.1.S1_at--494--10191Chr05:3517713..3517737 (25 bp)
TATATGGACTATGCACGTGGTGGTT
LOC_Os05g06780
Os.12266.1.S1_at--1048--731Chr05:3517680..3517704 (25 bp)
ATGTATCCTGTGTTTCGTCTGAGTA
LOC_Os05g06780
Target Sequence 
CTAGTTGACACAATGAGGGCGGGCAGGTTGGTGATCCTCGTGGCGGTGGCGGTGGTGGTGGTGGTCGCCGGCGGCGGGGC
GGCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGG
ACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCC
GTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGC
CGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTAT
CGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTG
CCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis