Browse Element(s) Details


OsAffx.26764.1.S1_at

Description tigr:9633.m00598
TID=OsAffx.26764.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0675011/11Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06730OsAffx.4264.1.S1_at11/115+3490294..3490563hypothetical protein
LOC_Os05g06740OsAffx.26763.1.S1_at11/115+3493623..3496463hypothetical protein
LOC_Os05g06750OsAffx.26764.1.S1_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06750OsAffx.26764.1.S1_x_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06750Os.8443.1.S1_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06760Os.6307.1.S1_at11/115+3509490..3512896macrophage erythroblast attacher, putative, expressed
LOC_Os05g06770Os.37856.1.S1_at11/115+3513361..3514176ubiquitin, putative, expressed
LOC_Os05g06780Os.12266.1.S1_at11/115+3517583..3518969protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os05g06790OsAffx.26765.1.S1_s_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06790OsAffx.26765.1.S1_at11/115+3524374..3527965hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009570cellular_componentchloroplast stroma
GO:0004148molecular_functiondihydrolipoyl dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26764.1.S1_at--1014--1011Chr05:3507601..3507625 (25 bp)
AGGTCACGTAGATTATGACACTGTA
LOC_Os05g06750
OsAffx.26764.1.S1_at--839--9671Chr05:3507604..3507628 (25 bp)
TCACGTAGATTATGACACTGTACCT
LOC_Os05g06750
OsAffx.26764.1.S1_at--644--1891Chr05:3507606..3507630 (25 bp)
ACGTAGATTATGACACTGTACCTGG
LOC_Os05g06750
OsAffx.26764.1.S1_at--746--4011Chr05:3507607..3507631 (25 bp)
CGTAGATTATGACACTGTACCTGGA
LOC_Os05g06750
OsAffx.26764.1.S1_at--242--6951Chr05:3507608..3507632 (25 bp)
GTAGATTATGACACTGTACCTGGAG
LOC_Os05g06750
OsAffx.26764.1.S1_at--635--10031Chr05:3507609..3507633 (25 bp)
TAGATTATGACACTGTACCTGGAGT
LOC_Os05g06750
OsAffx.26764.1.S1_at--733--6551Chr05:3507611..3507635 (25 bp)
GATTATGACACTGTACCTGGAGTGG
LOC_Os05g06750
OsAffx.26764.1.S1_at--802--151Chr05:3507612..3507636 (25 bp)
ATTATGACACTGTACCTGGAGTGGT
LOC_Os05g06750
OsAffx.26764.1.S1_at--47--10131Chr05:3507614..3507638 (25 bp)
TATGACACTGTACCTGGAGTGGTGT
LOC_Os05g06750
OsAffx.26764.1.S1_at--609--8951Chr05:3507616..3507640 (25 bp)
TGACACTGTACCTGGAGTGGTGTAC
LOC_Os05g06750
OsAffx.26764.1.S1_at--448--5631Chr05:3507617..3507641 (25 bp)
GACACTGTACCTGGAGTGGTGTACA
LOC_Os05g06750
Target Sequence 
AGGTCACGTAGATTATGACACTGTACCTGGAGTGGTGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis