Browse Element(s) Details


Os.8443.1.S1_at

Description gb:AK063865.1
DB_XREF= gi:32973883
TID=Os.8443.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8443 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-E03, full insert sequence.
FL= gb:AK063865.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0675011/11Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06730OsAffx.4264.1.S1_at11/115+3490294..3490563hypothetical protein
LOC_Os05g06740OsAffx.26763.1.S1_at11/115+3493623..3496463hypothetical protein
LOC_Os05g06750OsAffx.26764.1.S1_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06750OsAffx.26764.1.S1_x_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06750Os.8443.1.S1_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06760Os.6307.1.S1_at11/115+3509490..3512896macrophage erythroblast attacher, putative, expressed
LOC_Os05g06770Os.37856.1.S1_at11/115+3513361..3514176ubiquitin, putative, expressed
LOC_Os05g06780Os.12266.1.S1_at11/115+3517583..3518969protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os05g06790OsAffx.26765.1.S1_s_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06790OsAffx.26765.1.S1_at11/115+3524374..3527965hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009570cellular_componentchloroplast stroma
GO:0004148molecular_functiondihydrolipoyl dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8443.1.S1_at--1129--2111Chr05:3507994..3508018 (25 bp)
ACAGTTTCAACTGCCATCTAAAAAT
LOC_Os05g06750
Os.8443.1.S1_at--471--10051Chr05:3508066..3508090 (25 bp)
TAGTTTGTTTACCATTTCCTCAGCG
LOC_Os05g06750
Os.8443.1.S1_at--162--4691Chr05:3508088..3508112 (25 bp)
GCGGAACTGTGAATTCGCACCTTCA
LOC_Os05g06750
Os.8443.1.S1_at--218--4131Chr05:3508103..3508127 (25 bp)
CGCACCTTCACTTCTTATTGTAGTT
LOC_Os05g06750
Os.8443.1.S1_at--364--231Chr05:3508128..3508152 (25 bp)
ATATTCTTTTTCCTTGCTAGCTGGC
LOC_Os05g06750
Os.8443.1.S1_at--937--3991Chr05:3508154..3508178 (25 bp)
CGTCTGTTCCTACTCCTTAATAATA
LOC_Os05g06750
Os.8443.1.S1_at--836--3671Chr05:3508207..3508231 (25 bp)
CTTTTTTCTGTTGATACCTGAGACA
LOC_Os05g06750
Os.8443.1.S1_at--814--2731Chr05:3508231..3508255 (25 bp)
AAGAATACCACAGAGGCTGGCTCCC
LOC_Os05g06750
Os.8443.1.S1_at--912--4551Chr05:3508268..3508292 (25 bp)
GCGCCCTTCATCTCTGGAATTTTTT
LOC_Os05g06750
Os.8443.1.S1_at--1066--4891Chr05:3508293..3508317 (25 bp)
GCTTAATCCCAATTCTGATAGTCTA
LOC_Os05g06750
Os.8443.1.S1_at--764--7151Chr05:3508313..3508337 (25 bp)
GTCTATTTTCAGTATCTTTGTTGGG
LOC_Os05g06750
Target Sequence 
ACAGTTTCAACTGCCATCTAAAAATATTCCCCAAAGTTTTGAAATAATATGGAACGATGTGGTTAAAACATCTAGTTTGT
TTACCATTTCCTCAGCGGAACTGTGAATTCGCACCTTCACTTCTTATTGTAGTTATATTCTTTTTCCTTGCTAGCTGGCG
CGTCTGTTCCTACTCCTTAATAATATGGTAAAAACTTAATGCTGAATATGTTTCTTTTTTCTGTTGATACCTGAGACAAG
AATACCACAGAGGCTGGCTCCCCTAGATCNNATGGCGCCCTTCATCTCTGGAATTTTTTGCTTAATCCCAATTCTGATAG
TCTATTTTCAGTATCTTTGTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis