Browse Element(s) Details


OsAffx.4264.1.S1_at

Description tigr:9633.m00596
TID=OsAffx.4264.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0673011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06700Os.6413.1.S1_a_at11/115+3467185..3470310FAM18-like protein At1g09330, putative, expressed
LOC_Os05g06710Os.15072.1.S1_at11/115+3470699..3474778GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g06720Os.8555.1.S1_at11/115+3477116..3478845GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g06730OsAffx.4264.1.S1_at11/115+3490294..3490563hypothetical protein
LOC_Os05g06740OsAffx.26763.1.S1_at11/115+3493623..3496463hypothetical protein
LOC_Os05g06750OsAffx.26764.1.S1_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06750OsAffx.26764.1.S1_x_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06750Os.8443.1.S1_at11/115+3504926..3508418Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g06760Os.6307.1.S1_at11/115+3509490..3512896macrophage erythroblast attacher, putative, expressed
LOC_Os05g06770Os.37856.1.S1_at11/115+3513361..3514176ubiquitin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4264.1.S1_at--765--7151Chr05:3490359..3490383 (25 bp)
GTCTATTTTGCGTCCTTTGTATGAG
LOC_Os05g06730
OsAffx.4264.1.S1_at--462--6911Chr05:3490377..3490401 (25 bp)
GTATGAGGAGACAGAGCCCTCCCTT
LOC_Os05g06730
OsAffx.4264.1.S1_at--64--8071Chr05:3490383..3490407 (25 bp)
GGAGACAGAGCCCTCCCTTCAGGAG
LOC_Os05g06730
OsAffx.4264.1.S1_at--577--4171Chr05:3490397..3490421 (25 bp)
CCCTTCAGGAGGGACTAGCCGAATT
LOC_Os05g06730
OsAffx.4264.1.S1_at--949--5691Chr05:3490409..3490433 (25 bp)
GACTAGCCGAATTCAGGAACGAGTA
LOC_Os05g06730
OsAffx.4264.1.S1_at--127--1431Chr05:3490439..3490463 (25 bp)
AGAAAGGCTACATCGAGGCTGGTGA
LOC_Os05g06730
OsAffx.4264.1.S1_at--769--6211Chr05:3490453..3490477 (25 bp)
GAGGCTGGTGAAGACTACCACACAT
LOC_Os05g06730
OsAffx.4264.1.S1_at--544--5371Chr05:3490462..3490486 (25 bp)
GAAGACTACCACACATACATGGCTG
LOC_Os05g06730
OsAffx.4264.1.S1_at--1061--2171Chr05:3490472..3490496 (25 bp)
ACACATACATGGCTGAGGTTCAAGA
LOC_Os05g06730
OsAffx.4264.1.S1_at--677--8471Chr05:3490481..3490505 (25 bp)
TGGCTGAGGTTCAAGAATGGTCGAA
LOC_Os05g06730
OsAffx.4264.1.S1_at--688--211Chr05:3490509..3490533 (25 bp)
ATATTGGGATCTTTATTTTAACACT
LOC_Os05g06730
Target Sequence 
GTCTATTTTGCGTCCTTTGTATGAGGAGACAGAGCCCTCCCTTCAGGAGGGACTAGCCGAATTCAGGAACGAGTATGAAG
AGAAAGGCTACATCGAGGCTGGTGAAGACTACCACACATACATGGCTGAGGTTCAAGAATGGTCGAAGAAATATTGGGAT
CTTTATTTTAACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis